Entering edit mode
Yan Jiao
▴
140
@yan-jiao-4354
Last seen 10.1 years ago
Hi
I'm trying to ues retrieveKGML from KEGGgraph package:
retrieveKGML(pathwayid="05211", organism="hsa", destfile=tmp)
Warning message:
In download.file(kgml, destfile = destfile, method = method, ...) :
download had nonzero exit status
colFile <- system.file("extdata/hsa05211.xml",package="KEGGgraph")
g <- parseKGML2Graph(colFile)
Error: does not seem to be XML, nor to identify a file name
as you can see I got warning message, is it ok? I don't think it
worked
properly, since I got error after I ran parse KGML2Graph,
I guess i need to install wget, but can't find wget for win 64.
any suggestion?
many thanks
yan
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