Entering edit mode
Ming Zheng
▴
20
@ming-zheng-4396
Last seen 9.6 years ago
Hi,
I need to install the mogene10stv1cdf package to analyze the mouse
gene 1.0
ST array. I used the command specified on bioconductor page
(source("http://www.bioconductor.org/biocLite.R");
biocLite("mogene10stv1cdf");), but I got the following error message:
__________________________________________________________________
Running biocinstall version 2.3.14 with R version 2.8.0
Your version of R requires version 2.3 of Bioconductor.
Warning in install.packages(pkgs = pkgs, repos = repos, dependencies =
dependencies, :
argument 'lib' is missing: using '/usr/lib64/R/library'
Warning message:
In install.packages(pkgs = pkgs, repos = repos, dependencies =
dependencies,
:
Package mogene10stv1cdf is not available
__________________________________________________________________
Here is the sessionInfo:
> sessionInfo()
R version 2.8.0 (2008-10-20)
x86_64-redhat-linux-gnu
locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US
.UTF-8
;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;
LC_ADD
RESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
attached base packages:
[1] splines tools stats graphics grDevices utils
datasets
[8] methods base
other attached packages:
[1] limma_2.16.5 simpleaffy_2.18.0 genefilter_1.22.0
[4] survival_2.35-8 geneplotter_1.20.0 annotate_1.20.1
[7] xtable_1.5-6 AnnotationDbi_1.4.3 lattice_0.17-15
[10] affyPLM_1.18.1 preprocessCore_1.4.0 gcrma_2.14.1
[13] matchprobes_1.14.1 affy_1.20.2 Biobase_2.2.2
loaded via a namespace (and not attached):
[1] affyio_1.10.1 DBI_0.2-5 grid_2.8.0
KernSmooth_2.23-3
[5] RColorBrewer_1.0-2 RSQLite_0.8-3
Thanks a lot!
Ming
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