Question: question about get a summary gene expression information from the probe set associated with one specific gene
gravatar for Xiaowei Guan
8.8 years ago by
Xiaowei Guan90
Xiaowei Guan90 wrote:
Dear Bioconudctor, I have this question about how to compress the gene expression dataset from probe sets denoted to gene denoted values. The analysis has two simultaneous goals, first is to convert the probe sets to gene names. Second is to convert the probe sets values into just one summary gene expression value of the associated gene. For example, we have 21 probes that corresponding to only 4 genes, Is there any package will fulfill the goal of deriving a summary information of a probe set corresponding to a specific gene? Another question is: if there are no gene assignments for our data (only probes names here),is there any way to assign the genes to each probe simultaneous when getting the summary information of the probe set? When download the annotation file. I noticed there are some probes which have two or more gene names, and in such case, we want to have two same columns with different gene names. Thank you so much! Best, Xiaowei [[alternative HTML version deleted]]
annotation probe convert assign • 442 views
ADD COMMENTlink written 8.8 years ago by Xiaowei Guan90
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 105 users visited in the last hour