Question: Procedure
0
gravatar for Radhouane Aniba
8.7 years ago by
Radhouane Aniba240 wrote:
Hi BioC, A lot of yeast cross species expression data analysis exist in litterature today, is it a common procedure to process litterature for newly expressed species, let's stay in fungi for example. Is it possible to do an automated scan through databases using Bioconductor ? if yes which package allow to do that. Regards Rad [[alternative HTML version deleted]]
yeast process • 417 views
ADD COMMENTlink modified 8.7 years ago by Sean Davis21k • written 8.7 years ago by Radhouane Aniba240
Answer: Procedure
0
gravatar for Sean Davis
8.7 years ago by
Sean Davis21k
United States
Sean Davis21k wrote:
On Fri, Jan 7, 2011 at 3:12 PM, Radhouane Aniba <aradwen@gmail.com> wrote: > Hi BioC, > > A lot of yeast cross species expression data analysis exist in litterature > today, is it a common procedure to process litterature for newly expressed > species, let's stay in fungi for example. > > Is it possible to do an automated scan through databases using Bioconductor > ? if yes which package allow to do that. > > Hi, Radhouane. Are you looking for public gene expression data? If so, refer to the NCBI GEO and EBI ArrayExpress databases. There are tools to examine metadata from NCBI GEO (the GEOmetadb package) and to access data from GEO (GEOquery) and ArrayExpress (ArrayExpress). If you meant something else, perhaps you can clarify what you are asking. Sean > Regards > > Rad > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]
ADD COMMENTlink written 8.7 years ago by Sean Davis21k
Yes Sean, I meant public data. Thank you for your answer. Radhouane 2011/1/7 Sean Davis <sdavis2@mail.nih.gov> > > > On Fri, Jan 7, 2011 at 3:12 PM, Radhouane Aniba <aradwen@gmail.com> wrote: > >> Hi BioC, >> >> A lot of yeast cross species expression data analysis exist in litterature >> today, is it a common procedure to process litterature for newly expressed >> species, let's stay in fungi for example. >> >> Is it possible to do an automated scan through databases using >> Bioconductor >> ? if yes which package allow to do that. >> >> > Hi, Radhouane. Are you looking for public gene expression data? If so, > refer to the NCBI GEO and EBI ArrayExpress databases. There are tools to > examine metadata from NCBI GEO (the GEOmetadb package) and to access data > from GEO (GEOquery) and ArrayExpress (ArrayExpress). If you meant something > else, perhaps you can clarify what you are asking. > > Sean > > > >> Regards >> >> Rad >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor@r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> > > -- *Radhouane Aniba* *Bioinformatics Research Associate* *Institute for Advanced Computer Studies Center for Bioinformatics and Computational Biology* *(CBCB)* *University of Maryland, College Park MD 20742* [[alternative HTML version deleted]]
ADD REPLYlink written 8.7 years ago by Radhouane Aniba240
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