Question: Adding Illumina GEO GPL IDs to IlluminaIDMapping?
8.0 years ago by
Pan Du • 1.2k
Pan Du • 1.2k wrote:
Hi Denise Thanks for your suggestion. I agree it will be help to include GEO GPL IDs for different Illumina chips in the IlluminaIDMapping annotation package. If you have the mapping available, could you send me the list? So I don't need to search again. I will add an additional table for this in the IDMapping packages together with a retrieve function in the lumi package in the next Bioc release. Thanks! Pan On 2/2/11 4:10 PM, "Denise Mauldin" <dmauldin at="" systemsbiology.org=""> wrote: > Hello, > > I've been using the lumiHuman/Mouse/RatIDMapping packages from Bioconductor > for awhile now. Thanks very much for creating them. I was wondering if it > would be possible to either add a list of GEO GPL IDs to the package somehow > or if you could send me a corresponding list. By searching through the GEO > GPL records, I think I've figured out that HumanRef8_V3_0_R0_11282963_A is > GPL6883 and I could do this for the remainder of the packages, but I was > hoping that you may have a list available. > > Thanks, > Denise
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