Installing development packages
2
0
Entering edit mode
Paulo Nuin ▴ 200
@paulo-nuin-3012
Last seen 6.9 years ago
Canada
Hi I'm looking for the best way to install development packages. I couldn't find any reference on how to do it efficiently. Thanks in advance Paulo
• 423 views
ADD COMMENT
0
Entering edit mode
Dan Tenenbaum ★ 8.2k
@dan-tenenbaum-4256
Last seen 9 months ago
United States
On Mon, Feb 7, 2011 at 1:34 PM, Paulo Nuin <nuin@genedrift.org> wrote: > Hi > > I'm looking for the best way to install development packages. I couldn't > find any reference on how to do it efficiently. > Hi Paulo, The best way is to install and use the development version of R (R 2.13). Then, when you install packages in the normal way, that is: source("http://bioconductor.org/biocLite.R") biocLite("packageName") ...it will automatically install the development version of the package. Dan > > Thanks in advance > > Paulo > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]
ADD COMMENT
0
Entering edit mode
@sean-davis-490
Last seen 3 hours ago
United States
On Mon, Feb 7, 2011 at 4:34 PM, Paulo Nuin <nuin@genedrift.org> wrote: > Hi > > I'm looking for the best way to install development packages. I couldn't > find any reference on how to do it efficiently. > > Hi, Paulo. 1) Install the development version of R. 2) Follow the normal biocLite() installation process in the development version of R. And the last one is important: 3) Do not mix and match devel and release versions of R or bioconductor packages--stick to the process in (1) and (2) Sean > Thanks in advance > > Paulo > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]
ADD COMMENT
0
Entering edit mode
Thanks a lot. Trying right now. Cheers Paulo On 2011-02-07, at 4:39 PM, Sean Davis wrote: > > > On Mon, Feb 7, 2011 at 4:34 PM, Paulo Nuin <nuin at="" genedrift.org=""> wrote: > Hi > > I'm looking for the best way to install development packages. I couldn't find any reference on how to do it efficiently. > > > Hi, Paulo. > > 1) Install the development version of R. > 2) Follow the normal biocLite() installation process in the development version of R. > > And the last one is important: > > 3) Do not mix and match devel and release versions of R or bioconductor packages--stick to the process in (1) and (2) > > Sean > > Thanks in advance > > Paulo > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >
ADD REPLY

Login before adding your answer.

Traffic: 368 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6