goseq: gene universe
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Naomi Altman ★ 6.0k
@naomi-altman-380
Last seen 2.9 years ago
United States
Unlike GOstats, goseq does not seem to allow a gene universe. Wouldn't it make more sense to compare the DE genes to all the genes that express in the samples? --Naomi
GOstats goseq GOstats goseq • 1.1k views
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Jenny Drnevich ★ 2.0k
@jenny-drnevich-2812
Last seen 1 day ago
United States
Hi Naomi, The gene universe is specified by the named vector (your indicator variable from your last post); all the genes in the universe go into the vector names, and values of 1 or 0 show which genes are in your selected list. Cheers, Jenny At 09:31 PM 3/28/2011, Naomi Altman wrote: >Unlike GOstats, goseq does not seem to allow a gene >universe. Wouldn't it make more sense to compare the DE genes to >all the genes that express in the samples? > >--Naomi > >_______________________________________________ >Bioconductor mailing list >Bioconductor at r-project.org >https://stat.ethz.ch/mailman/listinfo/bioconductor >Search the archives: >http://news.gmane.org/gmane.science.biology.informatics.conductor
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