flowTrack error: package ‘flowTrack’ is not available
1
0
Entering edit mode
@louis-peperzak-4527
Last seen 7.3 years ago
Goodday, I tried to install flowTrack following Gopalakrishnan (2010) once, and a second time after setting the CRANmirror to Amsterdam. But without success. Results: 1) > source("http://bioconductor.org/course-packages/install- flowTrack.R") BioC_mirror = http://www.bioconductor.org Change using chooseBioCmirror(). Warning: packages 'robustbase, survival' are in use and will not be installed trying URL 'http://www.bioconductor.org/packages/2.7/data/experiment/b in/windows/contrib/2.12/affydata_1.11.11.zip' Content type 'application/zip' length 12734692 bytes (12.1 Mb) opened URL downloaded 12.1 Mb trying URL 'http://software.rc.fas.harvard.edu/mirrors/R/bin/windows/c ontrib/2.12/Matrix_0.999375-48.zip' Content type 'application/zip' length 3115720 bytes (3.0 Mb) opened URL downloaded 3.0 Mb trying URL 'http://software.rc.fas.harvard.edu/mirrors/R/bin/windows/c ontrib/2.12/mgcv_1.7-5.zip' Content type 'application/zip' length 928972 bytes (907 Kb) opened URL downloaded 907 Kb package 'affydata' successfully unpacked and MD5 sums checked package 'Matrix' successfully unpacked and MD5 sums checked package 'mgcv' successfully unpacked and MD5 sums checked The downloaded packages are in C:\Users\lpeperzak\AppData\Local\Temp\RtmpbfdzPg\downloaded_packages Warning message: In getDependencies(pkgs, dependencies, available, lib) : package ‘flowTrack’ is not available > library(flowTrack) Error in library(flowTrack) : there is no package called 'flowTrack' > utils:::menuShowCRAN() 2) > chooseCRANmirror() > source("http://bioconductor.org/course-packages/install- flowTrack.R") BioC_mirror = http://www.bioconductor.org Change using chooseBioCmirror(). Warning: packages 'robustbase, survival' are in use and will not be installed Warning messages: 1: In safeSource() : Redefining ‘biocinstall’ 2: In safeSource() : Redefining ‘biocinstallPkgGroups’ 3: In safeSource() : Redefining ‘biocinstallRepos’ 4: In getDependencies(pkgs, dependencies, available, lib) : package ‘flowTrack’ is not available [[alternative HTML version deleted]]
• 909 views
ADD COMMENT
0
Entering edit mode
@nishant-gopalakrishnan-3253
Last seen 7.3 years ago
Hi Louis, What version of R were you using ?. I believe that script will install flowTrack if you have R version 2.11 Nishant On 04/01/2011 06:39 AM, Louis Peperzak wrote: > Goodday, > I tried to install flowTrack following Gopalakrishnan (2010) once, and a second time after setting the CRANmirror to Amsterdam. But without success. > Results: > > 1) >> source("http://bioconductor.org/course-packages/install- flowTrack.R") > BioC_mirror = http://www.bioconductor.org > Change using chooseBioCmirror(). > Warning: packages 'robustbase, survival' are in use and will not be installed > trying URL 'http://www.bioconductor.org/packages/2.7/data/experiment /bin/windows/contrib/2.12/affydata_1.11.11.zip' > Content type 'application/zip' length 12734692 bytes (12.1 Mb) > opened URL > downloaded 12.1 Mb > trying URL 'http://software.rc.fas.harvard.edu/mirrors/R/bin/windows /contrib/2.12/Matrix_0.999375-48.zip' > Content type 'application/zip' length 3115720 bytes (3.0 Mb) > opened URL > downloaded 3.0 Mb > trying URL 'http://software.rc.fas.harvard.edu/mirrors/R/bin/windows /contrib/2.12/mgcv_1.7-5.zip' > Content type 'application/zip' length 928972 bytes (907 Kb) > opened URL > downloaded 907 Kb > package 'affydata' successfully unpacked and MD5 sums checked > package 'Matrix' successfully unpacked and MD5 sums checked > package 'mgcv' successfully unpacked and MD5 sums checked > The downloaded packages are in > C:\Users\lpeperzak\AppData\Local\Temp\RtmpbfdzPg\downloaded_packages > Warning message: > In getDependencies(pkgs, dependencies, available, lib) : > package ‘flowTrack’ is not available >> library(flowTrack) > Error in library(flowTrack) : there is no package called 'flowTrack' >> utils:::menuShowCRAN() > 2) >> chooseCRANmirror() >> source("http://bioconductor.org/course-packages/install- flowTrack.R") > BioC_mirror = http://www.bioconductor.org > Change using chooseBioCmirror(). > Warning: packages 'robustbase, survival' are in use and will not be installed > Warning messages: > 1: In safeSource() : Redefining ‘biocinstall’ > 2: In safeSource() : Redefining ‘biocinstallPkgGroups’ > 3: In safeSource() : Redefining ‘biocinstallRepos’ > 4: In getDependencies(pkgs, dependencies, available, lib) : > package ‘flowTrack’ is not available > > [[alternative HTML version deleted]] > > > > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor [[alternative HTML version deleted]]
ADD COMMENT
0
Entering edit mode
Hi Nishant, I have R 2.12.1. What do you suggest I do? Thanks, Louis Date: Fri, 1 Apr 2011 12:48:29 -0700 From: ngopalak@fhcrc.org To: louispeperzak@hotmail.com CC: bioconductor@r-project.org Subject: Re: [BioC] flowTrack error: package ‘flowTrack’ is not available Hi Louis, What version of R were you using ?. I believe that script will install flowTrack if you have R version 2.11 Nishant On 04/01/2011 06:39 AM, Louis Peperzak wrote: Goodday, I tried to install flowTrack following Gopalakrishnan (2010) once, and a second time after setting the CRANmirror to Amsterdam. But without success. Results: 1) source("http://bioconductor.org/course-packages/install-flowTrack.R") BioC_mirror = http://www.bioconductor.org Change using chooseBioCmirror(). Warning: packages 'robustbase, survival' are in use and will not be installed trying URL 'http://www.bioconductor.org/packages/2.7/data/experiment/b in/windows/contrib/2.12/affydata_1.11.11.zip' Content type 'application/zip' length 12734692 bytes (12.1 Mb) opened URL downloaded 12.1 Mb trying URL 'http://software.rc.fas.harvard.edu/mirrors/R/bin/windows/c ontrib/2.12/Matrix_0.999375-48.zip' Content type 'application/zip' length 3115720 bytes (3.0 Mb) opened URL downloaded 3.0 Mb trying URL 'http://software.rc.fas.harvard.edu/mirrors/R/bin/windows/c ontrib/2.12/mgcv_1.7-5.zip' Content type 'application/zip' length 928972 bytes (907 Kb) opened URL downloaded 907 Kb package 'affydata' successfully unpacked and MD5 sums checked package 'Matrix' successfully unpacked and MD5 sums checked package 'mgcv' successfully unpacked and MD5 sums checked The downloaded packages are in C:\Users\lpeperzak\AppData\Local\Temp\RtmpbfdzPg\downloaded_packages Warning message: In getDependencies(pkgs, dependencies, available, lib) : package ‘flowTrack’ is not available library(flowTrack) Error in library(flowTrack) : there is no package called 'flowTrack' utils:::menuShowCRAN() 2) chooseCRANmirror() source("http://bioconductor.org/course-packages/install-flowTrack.R") BioC_mirror = http://www.bioconductor.org Change using chooseBioCmirror(). Warning: packages 'robustbase, survival' are in use and will not be installed Warning messages: 1: In safeSource() : Redefining ‘biocinstall’ 2: In safeSource() : Redefining ‘biocinstallPkgGroups’ 3: In safeSource() : Redefining ‘biocinstallRepos’ 4: In getDependencies(pkgs, dependencies, available, lib) : package ‘flowTrack’ is not available [[alternative HTML version deleted]] _______________________________________________ Bioconductor mailing list Bioconductor@r-project.org https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor [[alternative HTML version deleted]]
ADD REPLY

Login before adding your answer.

Traffic: 467 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6