Hello, I am very new to R programming. I am trying to read the data from Genome Studio output using Limma package. I am able to do so by: >x <- read.ilmn(files="path.for.probe", other.columns="Detection") >x$other gives me the detection p values for all the samples for the respective genes While x$genes gives me the gene name and symbol I wanted to select all the genes with p values less than 0.1 (even if the p value of one sample for that particular gene is less than 0.1). Can you help me with this? Thanks, Rahul Maurya [[alternative HTML version deleted]]

Hi Rahul: I'm not sure what your question is. Can you provide more details about what you want to do so that you can get help? Cheers, Wei On May 5, 2011, at 2:50 AM, Rahul Maurya wrote: > Hello, > > > > I am very new to R programming. I am trying to read the data from Genome > Studio output using Limma package. I am able to do so by: > > > >> x <- read.ilmn(files="path.for.probe", other.columns="Detection") > > > >> x$other gives me the detection p values for all the samples for the > respective genes > > > > While x$genes gives me the gene name and symbol > > > > I wanted to select all the genes with p values less than 0.1 (even if the p > value of one sample for that particular gene is less than 0.1). > > > > Can you help me with this? > > > > Thanks, > > Rahul Maurya > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor ______________________________________________________________________ The information in this email is confidential and intend...{{dropped:6}}