Question: issue with graph package in using RBGL -‘'graph' is not a valid installed package’"
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gravatar for joe j
8.0 years ago by
joe j70
joe j70 wrote:
Dear all, I am trying to run the function "lambdaSets" using the package "RBGL". This package uses another package "graph" which has been removed from the CRAN repository, but is available at the archive (http://cran.r-project.org/src/contrib/Archive/graph/). I installed the package from the R menu at "install packages from local zip files" (after downloading the "graph_1.30.0.tar.gz" file, unzipping it and making it a zip file; gz is not recognized by R.). I get no warning here so I assumed installation went well. However, when I type "require(RBGL)" I get the error message that: "Failed with error: ??'graph' is not a valid installed package?". I am using R version 2.12.2 (2011-2-25). I am a new user so your advice would be of great help. Best wishes, Joe
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ADD COMMENTlink modified 8.0 years ago by Dan Tenenbaum8.2k • written 8.0 years ago by joe j70
Answer: issue with graph package in using RBGL -‘'graph' is not a valid installed packag
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gravatar for Dan Tenenbaum
8.0 years ago by
Dan Tenenbaum8.2k
United States
Dan Tenenbaum8.2k wrote:
Hi Joe, On Wed, May 11, 2011 at 8:29 AM, joe j <joe.stata at="" gmail.com=""> wrote: > Dear all, > > I am trying to run the function "lambdaSets" using the package "RBGL". > This package uses another package "graph" which has been removed from > the CRAN repository, but is available at the archive > (http://cran.r-project.org/src/contrib/Archive/graph/). > > I installed the package from the R menu at "install packages from > local zip files" (after downloading the "graph_1.30.0.tar.gz" file, > unzipping it and making it a zip file; gz is not recognized by R.). I > get no warning here so I assumed installation went well. However, when > I type "require(RBGL)" I get the error message that: "Failed with > error: ??'graph' is not a valid installed package?". > > I am using R version 2.12.2 (2011-2-25). I am a new user so your > advice would be of great help. > 'graph' has been removed from CRAN because the package also exists on Bioconductor, where a newer version is available. To get the latest version of 'graph', do the following in a new R session: source("http://bioconductor.org/biocLite.R") biocLite("graph") Dan > Best wishes, > Joe > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >
ADD COMMENTlink written 8.0 years ago by Dan Tenenbaum8.2k
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