Many thanks! Updating everything with: source("http://bioconductor.org/biocLite.R") update.packages(repos=biocinstallRepos(), ask=F) I solved the problem. Cheers Raffaele Il 16/05/2011 17:47, Martin Morgan ha scritto: > On 05/16/2011 06:50 AM, rcaloger wrote: >> Dear All, >> I am trying to load ShortRead package but I get the following error: >> >> library(Biostrings) >> library(ShortRead) >> Error : object ?compact? is not exported by 'namespace:Biostrings' >> Error: loading package/namespace failed for 'ShortRead' >> >> Any suggestions? > > Biostrings and IRanges changed as a bug fix. You installed (maybe > freom SVN?) an updated ShortRead but not the other packages. Try > > source("http://bioconductor.org/biocLite.R") > update.packages(repos=biocinstallRepos()) > > perhaps with ask=FALSE. > > Martin > >> Cheers >> Raffaele >> >> ########################################################## >> sessionInfo() >> >> R version 2.13.0 (2011-04-13) >> Platform: x86_64-pc-mingw32/x64 (64-bit) >> >> locale: >> [1] LC_COLLATE=Italian_Italy.1252 LC_CTYPE=Italian_Italy.1252 >> LC_MONETARY=Italian_Italy.1252 >> [4] LC_NUMERIC=C LC_TIME=Italian_Italy.1252 >> >> attached base packages: >> [1] stats graphics grDevices utils datasets methods base >> >> other attached packages: >> [1] Rsamtools_1.4.0 Biostrings_2.20.1 GenomicRanges_1.4.3 IRanges_1.10.3 >> lattice_0.19-23 >> >> loaded via a namespace (and not attached): >> [1] Biobase_2.12.1 grid_2.13.0 tools_2.13.0 >> >> > > -- ---------------------------------------- Prof. Raffaele A. Calogero Bioinformatics and Genomics Unit MBC Centro di Biotecnologie Molecolari Via Nizza 52, Torino 10126 tel. ++39 0116706457 Fax ++39 0116706487 Mobile ++39 3333827080 email: raffaele.calogero at unito.it raffaele[dot]calogero[at]gmail[dot]com www: http://www.bioinformatica.unito.it