rtracklayer - browserSession error
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Tim Smith ★ 1.1k
@tim-smith-1532
Last seen 7.9 years ago
Hi, I was trying to get started with rtracklayer. I tried to start a browser session but get an error ("Failed to obtain 'hguid' cookie"). The code and sessionInfo is: =============================== > library(rtracklayer) > library(IRanges) > session <- browserSession() Error in .local(.Object, ...) : Failed to obtain 'hguid' cookie > session <- browserSession("UCSC") Error in .local(.Object, ...) : Failed to obtain 'hguid' cookie > sessionInfo() R version 2.11.1 (2010-05-31) x86_64-apple-darwin9.8.0 locale: [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] vsn_3.16.0 microRNA_1.6.1 limma_3.4.4 genefilter_1.30.0 [5] humanStemCell_0.2.3 hgu133plus2.db_2.4.1 org.Hs.eg.db_2.4.1 RSQLite_0.9-1 [9] DBI_0.2-5 AnnotationDbi_1.10.1 Biobase_2.8.0 nlme_3.1-96 [13] IRanges_1.6.17 rtracklayer_1.8.1 RCurl_1.4-2 bitops_1.0-4.1 loaded via a namespace (and not attached): [1] affy_1.26.1 affyio_1.16.0 annotate_1.26.1 Biostrings_2.16.9 [5] BSgenome_1.16.5 GenomicRanges_1.0.9 grid_2.11.1 lattice_0.18-8 [9] preprocessCore_1.10.0 splines_2.11.1 survival_2.35-8 tools_2.11.1 [13] XML_3.1-0 xtable_1.5-6 ==================================== Do I need to set some other parameters before I can use this? thanks! [[alternative HTML version deleted]]
hgu133plus2 rtracklayer hgu133plus2 rtracklayer • 696 views
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@michael-lawrence-3846
Last seen 8 months ago
United States
My only guess is that this is some sort of network/proxy issue. Michael On Wed, May 25, 2011 at 8:31 AM, Tim Smith <tim_smith_666@yahoo.com> wrote: > Hi, > > I was trying to get started with rtracklayer. I tried to start a browser > session > but get an error ("Failed to obtain 'hguid' cookie"). The code and > sessionInfo > is: > > =============================== > > library(rtracklayer) > > library(IRanges) > > session <- browserSession() > Error in .local(.Object, ...) : Failed to obtain 'hguid' cookie > > session <- browserSession("UCSC") > Error in .local(.Object, ...) : Failed to obtain 'hguid' cookie > > sessionInfo() > R version 2.11.1 (2010-05-31) > x86_64-apple-darwin9.8.0 > > locale: > [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8 > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > other attached packages: > [1] vsn_3.16.0 microRNA_1.6.1 limma_3.4.4 > genefilter_1.30.0 > > [5] humanStemCell_0.2.3 hgu133plus2.db_2.4.1 org.Hs.eg.db_2.4.1 > RSQLite_0.9-1 > > [9] DBI_0.2-5 AnnotationDbi_1.10.1 Biobase_2.8.0 > nlme_3.1-96 > > [13] IRanges_1.6.17 rtracklayer_1.8.1 RCurl_1.4-2 > bitops_1.0-4.1 > > > loaded via a namespace (and not attached): > [1] affy_1.26.1 affyio_1.16.0 annotate_1.26.1 > Biostrings_2.16.9 > > [5] BSgenome_1.16.5 GenomicRanges_1.0.9 grid_2.11.1 > lattice_0.18-8 > > [9] preprocessCore_1.10.0 splines_2.11.1 survival_2.35-8 > tools_2.11.1 > > [13] XML_3.1-0 xtable_1.5-6 > ==================================== > > Do I need to set some other parameters before I can use this? > > thanks! > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]
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