Dear List., I am a longtime user of Pathway-Express and its commercial version, Pathway Guide. I am turning to the command-line implementation in bioconductor to be able to script sessions. In addition to Kegg Pathway pictiurres Pathway-Express and Pathway- Guide enables one to save an excel spreadsheet of the genes in each pathway and their fold- change perturbation factor etc. Is there a way to do this in SPIA? Thanks and best wishes, Rich ------------------------------------------------------------ Richard A. Friedman, PhD Associate Research Scientist, Biomedical Informatics Shared Resource Herbert Irving Comprehensive Cancer Center (HICCC) Lecturer, Department of Biomedical Informatics (DBMI) Educational Coordinator, Center for Computational Biology and Bioinformatics (C2B2)/ National Center for Multiscale Analysis of Genomic Networks (MAGNet) Room 824 Irving Cancer Research Center Columbia University 1130 St. Nicholas Ave New York, NY 10032 (212)851-4765 (voice) friedman at cancercenter.columbia.edu http://cancercenter.columbia.edu/~friedman/ I am a Bayesian. When I see a multiple-choice question on a test and I don't know the answer I say "eeney-meaney-miney-moe". Rose Friedman, Age 14