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weili yan
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10
@weili-yan-4768
Last seen 9.6 years ago
Dear Sir,
We performed a genomewide methylation assay among a 6:6 case-control
sample.
It is a two-colour signal data. We got 4 data files after the data
analysis
by using Illumia GenomeStudio-Methylation software.
My question is how can I extract data files required by LIMMA?
I hope to genotype the differential loci indicated by the discovery
array in
a larger sample, and perform association analysis between methylation
status
or degree with quantitative or qualitative phenotypes. LIMMA is no
doubt the
right tooll to do this.
However, we got problems in transfering Illumia data files to LIMMA.
Do you have any training or online learning materials about this? How
can I
get help from you?
Best wishes
Weili
--
WeiliYan, PhD, Director
Department of Clinical Epidemiology
Children's Hospital of Fudan University
399 Wanyuan Road
Minhang District, Shanghai 201102
Tel&Fax: (86) 21 64931215
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