align microRNA with custom mRNA sequences
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@herve-pages-1542
Last seen 5 hours ago
Seattle, WA, United States
Hi Jason, On 11-07-19 07:19 PM, Jason Shoemaker wrote: > Dear members, > > I was wondering if anyone can recommend software for aligning endogenous > microRNAs (from mirBASE) with a custom mRNA sequence our lab recently > received. I looked into the microRNA package, but it only allows for perfect > alignment, which I believe is limited to prokaryotes? Have you tried the Biostrings package? Cheers, H. > > Thank you in advanced! > Jason > -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319
Alignment Cancer Biostrings microRNA Alignment Cancer Biostrings microRNA • 586 views
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