Rgraphviz error : R- GUI Crashes on using plot()
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@saurabh-prasad-4814
Last seen 7.1 years ago
Hello, The R-Graphical user interface stops working when i use the plot() function from the Rgraphviz package during executing the following commands :- >data("NCI-cyList") >length(NCI.cyList) [1] 460 >library(Rgraphviz) Loading required package: graph Loading required package: grid >plot(NCI.cyList[[1]]) on executing the above command the R-Gui crashes . please help me with the issue . Thank you , Saurabh [[alternative HTML version deleted]]
Rgraphviz Rgraphviz • 749 views
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Dan Tenenbaum ★ 8.2k
@dan-tenenbaum-4256
Last seen 7 months ago
United States
On Wed, Aug 17, 2011 at 11:33 AM, Saurabh Prasad <pd.saurabh at="" gmail.com=""> wrote: > Hello, > > The R-Graphical user interface stops working when i use the plot() function > from the Rgraphviz package during executing the following commands :- > >>data("NCI-cyList") >>length(NCI.cyList) > [1] 460 >>library(Rgraphviz) > Loading required package: graph > Loading required package: grid > >>plot(NCI.cyList[[1]]) > > on ?executing the above command the R-Gui crashes . > > please help me with the issue . It's difficult to help without more information--please post the output of sessionInfo(), after loading Rgraphviz but before doing the plot command. Dan > Thank you , > > Saurabh > > ? ? ? ?[[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >
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Most likely you have not installed the package correctly. Can you do tmp = layoutGraph(NCI.cyList[[1]]) Kasper On Wed, Aug 17, 2011 at 2:38 PM, Dan Tenenbaum <dtenenba at="" fhcrc.org=""> wrote: > On Wed, Aug 17, 2011 at 11:33 AM, Saurabh Prasad <pd.saurabh at="" gmail.com=""> wrote: >> Hello, >> >> The R-Graphical user interface stops working when i use the plot() function >> from the Rgraphviz package during executing the following commands :- >> >>>data("NCI-cyList") >>>length(NCI.cyList) >> [1] 460 >>>library(Rgraphviz) >> Loading required package: graph >> Loading required package: grid >> >>>plot(NCI.cyList[[1]]) >> >> on ?executing the above command the R-Gui crashes . >> >> please help me with the issue . > > It's difficult to help without more information--please post the > output of sessionInfo(), after loading Rgraphviz but before doing the > plot command. > > Dan > >> Thank you , >> >> Saurabh >> >> ? ? ? ?[[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >> > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >
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Saurabh Please follow Dan's suggestion and provide more information. The more the better. Since it clearly does not work, it is not helpful to say "I installed Graphviz 2.20.3 as described". Repeatedly sending me off-list emails with the same content is just annoying me. Kasper On Wed, Aug 17, 2011 at 2:38 PM, Dan Tenenbaum <dtenenba at="" fhcrc.org=""> wrote: > On Wed, Aug 17, 2011 at 11:33 AM, Saurabh Prasad <pd.saurabh at="" gmail.com=""> wrote: >> Hello, >> >> The R-Graphical user interface stops working when i use the plot() function >> from the Rgraphviz package during executing the following commands :- >> >>>data("NCI-cyList") >>>length(NCI.cyList) >> [1] 460 >>>library(Rgraphviz) >> Loading required package: graph >> Loading required package: grid >> >>>plot(NCI.cyList[[1]]) >> >> on ?executing the above command the R-Gui crashes . >> >> please help me with the issue . > > It's difficult to help without more information--please post the > output of sessionInfo(), after loading Rgraphviz but before doing the > plot command. > > Dan > >> Thank you , >> >> Saurabh >> >> ? ? ? ?[[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >> > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >
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Hi, I have made a video of the whole process from a team viewer session with my colleague starting from the installation of R to the Error part . This is the link -> http://youtu.be/0JeEnjZIuak Please tell me where I am going wrong in the whole process Thank you, Saurabh On 8/19/11, Kasper Daniel Hansen <kasperdanielhansen at="" gmail.com=""> wrote: > Saurabh > > Please follow Dan's suggestion and provide more information. The more > the better. Since it clearly does not work, it is not helpful to say > "I installed Graphviz 2.20.3 as described". > > Repeatedly sending me off-list emails with the same content is just annoying > me. > > Kasper > > On Wed, Aug 17, 2011 at 2:38 PM, Dan Tenenbaum <dtenenba at="" fhcrc.org=""> wrote: >> On Wed, Aug 17, 2011 at 11:33 AM, Saurabh Prasad <pd.saurabh at="" gmail.com=""> >> wrote: >>> Hello, >>> >>> The R-Graphical user interface stops working when i use the plot() >>> function >>> from the Rgraphviz package during executing the following commands :- >>> >>>>data("NCI-cyList") >>>>length(NCI.cyList) >>> [1] 460 >>>>library(Rgraphviz) >>> Loading required package: graph >>> Loading required package: grid >>> >>>>plot(NCI.cyList[[1]]) >>> >>> on executing the above command the R-Gui crashes . >>> >>> please help me with the issue . >> >> It's difficult to help without more information--please post the >> output of sessionInfo(), after loading Rgraphviz but before doing the >> plot command. >> >> Dan >> >>> Thank you , >>> >>> Saurabh >>> >>> [[alternative HTML version deleted]] >>> >>> _______________________________________________ >>> Bioconductor mailing list >>> Bioconductor at r-project.org >>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>> Search the archives: >>> http://news.gmane.org/gmane.science.biology.informatics.conductor >>> >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> > -- -Saurabh
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Saurabh, On Tue, Aug 30, 2011 at 1:17 AM, Saurabh Prasad <pd.saurabh at="" gmail.com=""> wrote: > Hi, > > I have made a video of the whole process from a team viewer session > with my colleague starting from the installation of R to the Error > part . > > This is the link -> ?http://youtu.be/0JeEnjZIuak > > Please tell me where I am going wrong in the whole process It is a waste of everyone's time to make them watch a 15-minute video when you can simply provide a few facts about your configuration. Besides, it's impossible to see what is happening in the video; resolution is too low. Did you read the README for Rgraphviz? Did you install graphviz? The README is very comprehensive and should tell you what you need to know. Another option is to lauch a virtual machine that already has Rgraphviz configured; more info here: http://bioconductor.org/help/bioconductor-cloud-ami/ Dan > > Thank you, > Saurabh > On 8/19/11, Kasper Daniel Hansen <kasperdanielhansen at="" gmail.com=""> wrote: >> Saurabh >> >> Please follow Dan's suggestion and provide more information. ?The more >> the better. ?Since it clearly does not work, it is not helpful to say >> "I installed Graphviz 2.20.3 as described". >> >> Repeatedly sending me off-list emails with the same content is just annoying >> me. >> >> Kasper >> >> On Wed, Aug 17, 2011 at 2:38 PM, Dan Tenenbaum <dtenenba at="" fhcrc.org=""> wrote: >>> On Wed, Aug 17, 2011 at 11:33 AM, Saurabh Prasad <pd.saurabh at="" gmail.com=""> >>> wrote: >>>> Hello, >>>> >>>> The R-Graphical user interface stops working when i use the plot() >>>> function >>>> from the Rgraphviz package during executing the following commands :- >>>> >>>>>data("NCI-cyList") >>>>>length(NCI.cyList) >>>> [1] 460 >>>>>library(Rgraphviz) >>>> Loading required package: graph >>>> Loading required package: grid >>>> >>>>>plot(NCI.cyList[[1]]) >>>> >>>> on ?executing the above command the R-Gui crashes . >>>> >>>> please help me with the issue . >>> >>> It's difficult to help without more information--please post the >>> output of sessionInfo(), after loading Rgraphviz but before doing the >>> plot command. >>> >>> Dan >>> >>>> Thank you , >>>> >>>> Saurabh >>>> >>>> ? ? ? ?[[alternative HTML version deleted]] >>>> >>>> _______________________________________________ >>>> Bioconductor mailing list >>>> Bioconductor at r-project.org >>>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>>> Search the archives: >>>> http://news.gmane.org/gmane.science.biology.informatics.conductor >>>> >>> >>> _______________________________________________ >>> Bioconductor mailing list >>> Bioconductor at r-project.org >>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>> Search the archives: >>> http://news.gmane.org/gmane.science.biology.informatics.conductor >>> >> > > > -- > -Saurabh >
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