a question for SPIA package
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Jing Huang ▴ 380
@jing-huang-4737
Last seen 8.1 years ago
Dear Adi and other members, In order to generate a de=tgl$logFC and all=x$ENTREZ for SPIA application, one needs to use package hgu133plus2.db to get ENTREZID. My data was generated by GPL2507<http: www.ncbi.nlm.nih.gov="" geo="" query="" acc.cgi?acc="GPL2507">: Sentrix Human-6 Expression BeadChip, which is from Illumina Inc. What annotation package I should use? Can I still use hgu133plus2.db? Many thanks Jing [[alternative HTML version deleted]]
Annotation hgu133plus2 Annotation hgu133plus2 • 695 views
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@sean-davis-490
Last seen 5 weeks ago
United States
Hi, Jing. You might try using an Illumina annotation package such as: http://bioconductor.org/packages/release/data/annotation/html/illumina Humanv1.db.html Sean On Mon, Aug 22, 2011 at 3:19 PM, Jing Huang <huangji at="" ohsu.edu=""> wrote: > Dear Adi and other members, > > In order to generate a de=tgl$logFC and all=x$ENTREZ for SPIA application, one needs to use package hgu133plus2.db to get ENTREZID. My data was generated by ?GPL2507<http: www.ncbi.nlm.nih.gov="" geo="" query="" acc.cgi?acc="GPL2507">: Sentrix Human-6 Expression BeadChip, which is from Illumina Inc. > > What annotation package I should use? Can I still use hgu133plus2.db? > > Many thanks > > Jing > > ? ? ? ?[[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >
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