makeContrast in limma package
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@paz-tapia-ramirez-4783
Last seen 9.6 years ago
Hi, I don't known the argument in makeContrast function of limma package. Says: contrast <- makeContrasts("X - Y", levels=design) I known that X can be Treatment and Y the Control, but what is equivalent? some specific columns target in my target file? Thanks, Paz [[alternative HTML version deleted]]
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@gordon-smyth
Last seen 7 hours ago
WEHI, Melbourne, Australia
Dear Paz, I don't understand your question, or what you are trying to do, but you might find it helpful to read the limma User's Guide, and follow one of the examples of using makeContrasts(). Best wishes Gordon > Date: Mon, 19 Sep 2011 15:12:31 +0000 > From: Paz Tapia Ramirez <verotapia at="" alumnos.utalca.cl=""> > To: <bioconductor at="" r-project.org=""> > Subject: [BioC] makeContrast in limma package > > > Hi, > I don't known the argument in makeContrast function of limma package. > > Says: > > contrast <- makeContrasts("X - Y", levels=design) > > I known that X can be Treatment and Y the Control, but what is > equivalent? some specific columns target in my target file? > Thanks, > Paz ______________________________________________________________________ The information in this email is confidential and intend...{{dropped:4}}
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