Question: DEXSeq package
0
gravatar for Liu,Bin
8.1 years ago by
Liu,Bin50
Liu,Bin50 wrote:
Hi, I was using DEXSeq package for exon differential analysis. I got the following error message. Could anyone help? thanks a lot. Bin ---------------------------------------------------- > esc_data <- estimateDispersions(esc_data) Dispersion estimation. (Progress report: one dot per 100 genes) .............................................................Error in glm.fit(x = numeric(0), y = numeric(0), weights = NULL, start = c(0.1, : object 'fit' not found In addition: Warning messages: 1: In glm.fit(x = numeric(0), y = numeric(0), weights = NULL, start = c(0.1, : no observations informative at iteration 1 2: glm.fit: algorithm did not converge
dexseq • 798 views
ADD COMMENTlink modified 8.1 years ago by Wolfgang Huber13k • written 8.1 years ago by Liu,Bin50
Answer: DEXSeq package
0
gravatar for Alejandro Reyes
8.1 years ago by
Alejandro Reyes30 wrote:
Hi Bin Could you send the complete code you used being more specific (e.g. from the creation of your object to this step and adding also the session information)?. If possible, it would be good if you could send me your ecs object to have a closer look. Alejandro Reyes Hi, I was using *DEXSeq* package for exon differential analysis. I got the following error message. Could anyone help? thanks a lot. Bin ---------------------------------------------------- > esc_data<- estimateDispersions(esc_data) Dispersion estimation. (Progress report: one dot per 100 genes) .............................................................Error in glm.fit(x = numeric(0), y = numeric(0), weights = NULL, start = c(0.1, : object 'fit' not found In addition: Warning messages: 1: In glm.fit(x = numeric(0), y = numeric(0), weights = NULL, start = c(0.1, : no observations informative at iteration 1 2: glm.fit: algorithm did not converge [[alternative HTML version deleted]]
ADD COMMENTlink written 8.1 years ago by Alejandro Reyes30
Answer: DEXSeq package
0
gravatar for Wolfgang Huber
8.1 years ago by
EMBL European Molecular Biology Laboratory
Wolfgang Huber13k wrote:
Dear Bin thank you for your feedback. Two suggestions: Please do not cross-post the same question on multiple lists. This is considered impolite because it wastes other people's time. Please consider the posting guide, which asks for: - output of sessionInfo() - a reproducible example. best wishes Wolfgang Sep/22/11 7:33 PM, Liu,Bin scripsit:: > Hi, I was using DEXSeq package for exon differential analysis. I got the following error message. Could anyone help? thanks a lot. > > Bin > ---------------------------------------------------- > >> esc_data<- estimateDispersions(esc_data) > Dispersion estimation. (Progress report: one dot per 100 genes) > .............................................................Error in glm.fit(x = numeric(0), y = numeric(0), weights = NULL, start = c(0.1, : > object 'fit' not found > In addition: Warning messages: > 1: In glm.fit(x = numeric(0), y = numeric(0), weights = NULL, start = c(0.1, : > no observations informative at iteration 1 > 2: glm.fit: algorithm did not converge > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Wolfgang Huber EMBL http://www.embl.de/research/units/genome_biology/huber
ADD COMMENTlink written 8.1 years ago by Wolfgang Huber13k
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