meta analysis
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Joao Fadista ▴ 40
@joao-fadista-4942
Last seen 9.6 years ago
Dear all, I would like to know if there is an R/Bioconductor package able to do meta analysis of data for which I have input files from different eQTL studies that have more or less this format: probeset snp p.value test_statistic fdr bonferroni gene_id symbol 205159_at rs10499057 7.96741233607362e-23 21.9690867589435 2.92567817610749e-14 4.97365289938274e-13 1439 CSF2RB 203096_s_at rs2016061 4.84352000079801e-21 19.4777346060488 1.5913498821031e-12 3.02356477599589e-11 9693 RAPGEF2 Best regards, João Fadista, Ph.D. Post Doc Lund University Diabetes Centre CRC, Malmö University Hospital Entrance 72, building 60, level 13 SE-205 02 Malmö, Sweden Tel: +46 (0)40 391237 e-mail: joao.fadista@med.lu.se<mailto:mikael.akerlund@med.lu.se> [[alternative HTML version deleted]]
SNP SNP • 640 views
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Entering edit mode
Joao Fadista ▴ 40
@joao-fadista-4942
Last seen 9.6 years ago
Dear all, I would like to know if there is an R/Bioconductor package able to do meta analysis of data for which I have input files from different eQTL studies that have this format: probeset snp p.value test_statistic fdr bonferroni gene_id symbol 205159_at rs10499057 7.96741233607362e-23 21.9690867589435 2.92567817610749e-14 4.97365289938274e-13 1439 CSF2RB 203096_s_at rs2016061 4.84352000079801e-21 19.4777346060488 1.5913498821031e-12 3.02356477599589e-11 9693 RAPGEF2 Best regards, João Fadista, Ph.D. Post Doc Lund University Diabetes Centre CRC, Malmö University Hospital Entrance 72, building 60, level 13 SE-205 02 Malmö, Sweden Tel: +46 (0)40 391237 e-mail: joao.fadista@med.lu.se<mailto:mikael.akerlund@med.lu.se> [[alternative HTML version deleted]]
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