Thanks a lot Martin, now it works! Best Claudia 2011/11/8 Martin Morgan <mtmorgan@fhcrc.org> > On 11/08/2011 06:50 AM, Claudia Calabrese wrote: > >> Hi all! >> I'm trying to install the 'goseq' package but it returns an error. I'm >> working with the R version 2.11.1 (2010-05-31). >> The code is: >> >> source("http://www.**bioconductor.org/biocLite.R<http: www.biocon="" ductor.org="" bioclite.r=""> >>> ") >>> >> BioC_mirror = http://www.bioconductor.org >> Change using chooseBioCmirror(). >> >>> bioclite("goseq") >>> >> Using R version 2.11.1, biocinstall version 2.6.10. >> Installing Bioconductor version 2.6 packages: >> [1] "goseq" >> Please wait... >> >> Warning in install.packages(pkgs= pkgs, repos= repos, ...) : >> argument 'lib' is missing: using 'Users/macbookpro/Library/R/2.** >> 11/library' >> also installing the dependencies 'BiasedUrn', 'geneLenDataBase' >> >> I try with the URL ' >> http://rm.mirror.garr.it/**mirrors/CRAN/bin/macosx/** >> leopard/contrib/2.11/**BiasedUrn_1.03.tgz<http: rm.mirror.garr.it="" mirrors="" cran="" bin="" macosx="" leopard="" contrib="" 2.11="" biasedurn_1.03.tgz=""> >> ' >> Content type 'application/x-gzip' length 313797 bytes (306kb) >> Open URL >> ==============================**==== >> downloaded 306 kb >> > > Hi Claudia -- you might try an alternative Bioconductor > > source("http://bioconductor.**org/biocLite.R<http: bioconductor.or="" g="" bioclite.r=""> > ") > chooseBioCmirror() > > or CRAN mirror; the mirror in Dortmund would be a particular good choice. > > Martin > > > >> >> And so the process freezes at this point.. >> >> Could be a problem with the R version I use?? >> >> Thank you in advance >> >> >> Best >> Claudia >> >> > > -- > Computational Biology > Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 > > Location: M1-B861 > Telephone: 206 667-2793 > -- Claudia Claudia Calabrese, PhD student Dip.Scienze Ginecologiche, Ostetriche e Pediatriche U.O. Genetica Medica - Pad.11 Pol.S.Orsola-Malpighi, via Massarenti 9 40138, Bologna Tel. +39 051 2088418 Fax. +39 051 2088416 [[alternative HTML version deleted]]