Rsubread package not available?
2
0
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Noah Dowell ▴ 410
@noah-dowell-3791
Last seen 6.9 years ago

Hello All,

I am trying to use the Rsubread package which is supposedly available but I am getting the following warning message.

Thanks for your help.

Best,

Noah

> source("http://www.bioconductor.org/biocLite.R")
BiocInstaller version 1.2.1, ?biocLite for help
> biocLite("Rsubread")
BioC_mirror: 'http://www.bioconductor.org'
Using R version 2.14, BiocInstaller version 1.2.1.
Installing package(s) 'Rsubread'
Warning message:
In getDependencies(pkgs, dependencies, available, lib) :
  package 'Rsubread' is not available (for R version 2.14.0)


> sessionInfo()
R version 2.14.0 (2011-10-31)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] BiocInstaller_1.2.1

loaded via a namespace (and not attached):
[1] tools_2.14.0
Rsubread BiocInstaller • 872 views
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@gordon-smyth
Last seen 4 hours ago
WEHI, Melbourne, Australia

30 August 2019

Starting from version 1.35.24, Rsubread is now available for Windows as well as the other platforms. For the moment, this is only for the developmental version of Bioconductor but it will migrate to the release version before the Bioconductor 3.10 release.

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@james-w-macdonald-5106
Last seen 7 hours ago
United States
Hi Noah, On 12/5/2011 4:09 PM, Noah Dowell wrote: > Hello All, > > I am trying to use the Rsubread package which is supposedly available but I am getting the following warning message. It is only available as a source package. If you are set up to build packages from source, you can simply add the argument type="source" to your biocLite() call. Otherwise, http://cran.r-project.org/bin/macosx/RMacOSX-FAQ.html#Installation-of- source-packages Best, Jim > Thanks for your help. > > Best, > > Noah > > >> source("http://www.bioconductor.org/biocLite.R") > BiocInstaller version 1.2.1, ?biocLite for help >> biocLite("Rsubread") > BioC_mirror: 'http://www.bioconductor.org' > Using R version 2.14, BiocInstaller version 1.2.1. > Installing package(s) 'Rsubread' > Warning message: > In getDependencies(pkgs, dependencies, available, lib) : > package ?Rsubread? is not available (for R version 2.14.0) > > >> sessionInfo() > R version 2.14.0 (2011-10-31) > Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) > > locale: > [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > other attached packages: > [1] BiocInstaller_1.2.1 > > loaded via a namespace (and not attached): > [1] tools_2.14.0 > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- James W. MacDonald, M.S. Biostatistician Douglas Lab University of Michigan Department of Human Genetics 5912 Buhl 1241 E. Catherine St. Ann Arbor MI 48109-5618 734-615-7826 ********************************************************** Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues
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