Is there a way to print the report in pdf format ? I tried the following and got an error. thanks kavita >class(qa) [1] "ShortReadQQA" attr(,"package") [1] "ShortRead" >rpt <- report(qa,dest = "REPORT.pdf", type = "pdf") Error: UserArgumentMismatch 'report, type="pdf"' not implemented for class 'ShortReadQQA' -- output of sessionInfo(): R version 2.13.2 (2011-09-30) Platform: x86_64-unknown-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] ShortRead_1.10.4 Rsamtools_1.4.3 lattice_0.19-33 [4] Biostrings_2.20.4 GenomicRanges_1.4.6 IRanges_1.10.4 loaded via a namespace (and not attached): [1] Biobase_2.12.2 grid_2.13.2 hwriter_1.3 multicore_0.1-7 -- Sent via the guest posting facility at bioconductor.org.

Hi Kavita, On Thu, Dec 29, 2011 at 3:01 PM, Kavita Garg [guest] <guest at="" bioconductor.org=""> wrote: > > Is there a way to print the report in pdf format ? I tried the following and got an error. > > thanks > kavita > >>class(qa) > [1] "ShortReadQQA" > attr(,"package") > [1] "ShortRead" > >>rpt <- report(qa,dest = "REPORT.pdf", type = "pdf") > > Error: UserArgumentMismatch > ?'report, type="pdf"' not implemented for class 'ShortReadQQA' > > Looking at the documentation (?report) suggests that generating PDF reports is deprecated. If you really need PDF, google can suggest some tools to convert HTML to PDF. Dan > ?-- output of sessionInfo(): > > R version 2.13.2 (2011-09-30) > Platform: x86_64-unknown-linux-gnu (64-bit) > > locale: > ?[1] LC_CTYPE=en_US.UTF-8 ? ? ? LC_NUMERIC=C > ?[3] LC_TIME=en_US.UTF-8 ? ? ? ?LC_COLLATE=en_US.UTF-8 > ?[5] LC_MONETARY=C ? ? ? ? ? ? ?LC_MESSAGES=en_US.UTF-8 > ?[7] LC_PAPER=en_US.UTF-8 ? ? ? LC_NAME=C > ?[9] LC_ADDRESS=C ? ? ? ? ? ? ? LC_TELEPHONE=C > [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C > > attached base packages: > [1] stats ? ? graphics ?grDevices utils ? ? datasets ?methods ? base > > other attached packages: > [1] ShortRead_1.10.4 ? ?Rsamtools_1.4.3 ? ? lattice_0.19-33 > [4] Biostrings_2.20.4 ? GenomicRanges_1.4.6 IRanges_1.10.4 > > loaded via a namespace (and not attached): > [1] Biobase_2.12.2 ?grid_2.13.2 ? ? hwriter_1.3 ? ? multicore_0.1-7 > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor