GB_ACC to ENTREZ_ID
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Reema Singh ▴ 570
@reema-singh-4373
Last seen 9.6 years ago
Hi All The platform for GSE4137 is "Custom cDNA 41,424 clones", and organism is human. I tried the code which you mentioned,but gives me error:- get("AA502230",revmap(org.Hs.egACCNUM)) Error in .checkKeys(value, Rkeys(x), x at ifnotfound) : value for "AA502230" not found Is this error coming becuase i am using it for cDNA platform? Regards
Organism Organism • 1.2k views
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@hotz-hans-rudolf-3951
Last seen 3.5 years ago
Switzerland
This particular error is due to the fact that the "AA502230" (which is the accession for an entry from dbEST) is not cross-referenced to an Entrez GeneId, see: http://www.ncbi.nlm.nih.gov/nucest/2237197?report=genbank Regards, Hans On 01/04/2012 06:22 AM, Reema Singh wrote: > Hi All > > The platform for GSE4137 is "Custom cDNA 41,424 > clones", and organism is human. I tried the code which you > mentioned,but gives me error:- > > get("AA502230",revmap(org.Hs.egACCNUM)) > Error in .checkKeys(value, Rkeys(x), x at ifnotfound) : > value for "AA502230" not found > > Is this error coming becuase i am using it for cDNA platform? > > Regards > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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