Question: KEGGSOAP
0
gravatar for Ricardo Silva
7.8 years ago by
Ricardo Silva110
Ricardo Silva110 wrote:
Hi, i'm a beginner user of KEGGSOAP and for my application, one of the most important kegg functions is get_reactions_by_compound, can I create a function to KEGGSOAP with something like this function (compound.id.list) { require(KEGGSOAP) unlist(.SOAP(KEGGserver, "get_reactions_by_compounds", .soapArgs = list(compounds_id_list = compound.id.list), action = KEGGaction, xmlns = c("URI", "SOAP/KEGG"), nameSpaces = SOAPNameSpaces(version = KEGGsoapns), .types = list(listType))) } where do I found KEGGaction definitions? best regards Ricardo [[alternative HTML version deleted]]
keggsoap • 415 views
ADD COMMENTlink modified 7.8 years ago by Marc Carlson7.2k • written 7.8 years ago by Ricardo Silva110
Answer: KEGGSOAP
0
gravatar for Marc Carlson
7.8 years ago by
Marc Carlson7.2k
United States
Marc Carlson7.2k wrote:
Hi Ricardo, I think you are on the right track. You will also want to look at the zzz.R file in KEGGSOAP which has the few lines of code needed (from the XML package) to parse the WSDL. If you are curious about the KEGG API. Have a look at their website: http://www.kegg.jp/kegg/soap/doc/keggapi_manual.html Does that answer your question? Marc ----- Original Message ----- From: "Ricardo Silva" <rsilvabioinfo@usp.br> To: bioconductor at stat.math.ethz.ch Sent: Tuesday, January 17, 2012 6:37:57 AM Subject: [BioC] KEGGSOAP Hi, i'm a beginner user of KEGGSOAP and for my application, one of the most important kegg functions is get_reactions_by_compound, can I create a function to KEGGSOAP with something like this function (compound.id.list) { require(KEGGSOAP) unlist(.SOAP(KEGGserver, "get_reactions_by_compounds", .soapArgs = list(compounds_id_list = compound.id.list), action = KEGGaction, xmlns = c("URI", "SOAP/KEGG"), nameSpaces = SOAPNameSpaces(version = KEGGsoapns), .types = list(listType))) } where do I found KEGGaction definitions? best regards Ricardo [[alternative HTML version deleted]] _______________________________________________ Bioconductor mailing list Bioconductor at r-project.org https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
ADD COMMENTlink written 7.8 years ago by Marc Carlson7.2k
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