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Question: Rsubread installation failed.
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gravatar for Sang Chul Choi
5.8 years ago by
Sang Chul Choi230 wrote:
Hi, I tried in vain to install Rsubread. > biocLite("Rsubread") BioC_mirror: 'http://www.bioconductor.org' Using R version 2.14, BiocInstaller version 1.2.1. Installing package(s) 'Rsubread' Warning message: In getDependencies(pkgs, dependencies, available, lib) : package ?Rsubread? is not available (for R version 2.14.1) Thank you, SangChul
ADD COMMENTlink modified 5.8 years ago by Dan Tenenbaum ♦♦ 8.2k • written 5.8 years ago by Sang Chul Choi230
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gravatar for Dan Tenenbaum
5.8 years ago by
Dan Tenenbaum ♦♦ 8.2k
United States
Dan Tenenbaum ♦♦ 8.2k wrote:
On Mon, Feb 6, 2012 at 7:47 AM, Sang Chul Choi <schoi at="" cornell.edu=""> wrote: > Hi, > > I tried in vain to install Rsubread. > >> biocLite("Rsubread") > BioC_mirror: 'http://www.bioconductor.org' > Using R version 2.14, BiocInstaller version 1.2.1. > Installing package(s) 'Rsubread' > Warning message: > In getDependencies(pkgs, dependencies, available, lib) : > ?package ?Rsubread? is not available (for R version 2.14.1) You don't say which operating system you are using, but Rsubread is not presently available for Windows or Mac OS X. http://bioconductor.org/packages/release/bioc/html/Rsubread.html Dan > > Thank you, > > SangChul > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
ADD COMMENTlink written 5.8 years ago by Dan Tenenbaum ♦♦ 8.2k
I think that that was why. I am using Mac, and could not compile subread either. Thank you, SangChul On Feb 6, 2012, at 11:16 AM, Dan Tenenbaum wrote: > On Mon, Feb 6, 2012 at 7:47 AM, Sang Chul Choi <schoi at="" cornell.edu=""> wrote: >> Hi, >> >> I tried in vain to install Rsubread. >> >>> biocLite("Rsubread") >> BioC_mirror: 'http://www.bioconductor.org' >> Using R version 2.14, BiocInstaller version 1.2.1. >> Installing package(s) 'Rsubread' >> Warning message: >> In getDependencies(pkgs, dependencies, available, lib) : >> package ?Rsubread? is not available (for R version 2.14.1) > > > You don't say which operating system you are using, but Rsubread is > not presently available for Windows or Mac OS X. > > http://bioconductor.org/packages/release/bioc/html/Rsubread.html > > Dan > > >> >> Thank you, >> >> SangChul >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
ADD REPLYlink written 5.8 years ago by Sang Chul Choi230
On Mon, Feb 6, 2012 at 9:23 AM, Sang Chul Choi <schoi at="" cornell.edu=""> wrote: > I think that that was why. I am using Mac, and could not compile subread either. > Rsubread is not supported on Mac at present, even if you try and compile it from source. Please see the following thread on the Bioconductor list for an explanation: https://stat.ethz.ch/pipermail/bioconductor/attachments/20111209/c924b aab/attachment.pl Dan > Thank you, > > SangChul > > On Feb 6, 2012, at 11:16 AM, Dan Tenenbaum wrote: > >> On Mon, Feb 6, 2012 at 7:47 AM, Sang Chul Choi <schoi at="" cornell.edu=""> wrote: >>> Hi, >>> >>> I tried in vain to install Rsubread. >>> >>>> biocLite("Rsubread") >>> BioC_mirror: 'http://www.bioconductor.org' >>> Using R version 2.14, BiocInstaller version 1.2.1. >>> Installing package(s) 'Rsubread' >>> Warning message: >>> In getDependencies(pkgs, dependencies, available, lib) : >>> ?package ?Rsubread? is not available (for R version 2.14.1) >> >> >> You don't say which operating system you are using, but Rsubread is >> not presently available for Windows or Mac OS X. >> >> http://bioconductor.org/packages/release/bioc/html/Rsubread.html >> >> Dan >> >> >>> >>> Thank you, >>> >>> SangChul >>> _______________________________________________ >>> Bioconductor mailing list >>> Bioconductor at r-project.org >>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >
ADD REPLYlink written 5.8 years ago by Dan Tenenbaum ♦♦ 8.2k
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