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Hi All,
I am trying to install "org.At.tair.db" and "ath1121501.db" packages
on working
node of my server and getting the following problems. Except these two
packages
I successfully installed few other packages from R on the same node. I
am not
getting where exactly the problem is. Can someone please help.
Thanks,
RT
-- output of sessionInfo():
Session Info:
> sessionInfo()
R version 2.11.0 (2010-04-22)
x86_64-redhat-linux-gnu
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] tools_2.11.0
> source("http://www.bioconductor.org/biocLite.R")
BioC_mirror = http://www.bioconductor.org
Change using chooseBioCmirror().
> biocLite("org.At.tair.db")
Using R version 2.11.0, biocinstall version 2.6.10.
Installing Bioconductor version 2.6 packages:
[1] "org.At.tair.db"
Please wait...
Warning in install.packages(pkgs = pkgs, repos = repos, ...) :
argument 'lib' is missing: using
'/home/XXX/R/x86_64-redhat-linux-gnu-library/2.11'
trying URL
'http://www.bioconductor.org/packages/2.6/data/annotation/src/contrib/
org.At.tair.db_2.4.3.tar.gz'
Content type 'application/x-gzip' length 26130925 bytes (24.9 Mb)
opened URL
==================================================
downloaded 24.9 Mb
ERROR: failed to lock directory
???/home/XXX/R/x86_64-redhat-linux-gnu-library/2.11??? for modifying
Try removing ???/home/XXX/R/x86_64-redhat-linux-gnu-
library/2.11/00LOCK???
The downloaded packages are in
???/tmp/Rtmphd9Etx/downloaded_packages???
Warning message:
In install.packages(pkgs = pkgs, repos = repos, ...) :
installation of package 'org.At.tair.db' had non-zero exit status
--
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