Question: SNPlocs package for dbSNP 135
0
gravatar for Hervé Pagès
7.8 years ago by
Hervé Pagès ♦♦ 14k
United States
Hervé Pagès ♦♦ 14k wrote:
Hi, I've rolled up a new SNPlocs package, SNPlocs.Hsapiens.dbSNP.20111119, that contains SNPs ids, locations and alleles, extracted from dbSNP 135: > library(SNPlocs.Hsapiens.dbSNP.20111119) > sum(getSNPcount()) [1] 43938303 Its version (0.99.6) and API are exactly the same as for the other SNPlocs packages. I've postponed the improvements I have on my list for those packages to the next version (0.99.7). Hopefully that will happen before the next BioC release. Cheers, H. -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319
cancer snplocs • 583 views
ADD COMMENTlink modified 4.4 years ago by genefan0 • written 7.8 years ago by Hervé Pagès ♦♦ 14k
Answer: SNPlocs package for dbSNP 135
0
gravatar for genefan
4.4 years ago by
genefan0
Germany
genefan0 wrote:

Dear Pages,

 

It happened to me that rsidsToGRanges function doesn't work any more in this library(SNPlocs.Hsapiens.dbSNP.20111119). But for dbSNP137 or later it doesn't have any problem. Many thanks for any solution in advance!

 

Best regards,

genefan

ADD COMMENTlink written 4.4 years ago by genefan0
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