GAGE heatmap pdf question...
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Alan Derr ▴ 50
@alan-derr-5099
Last seen 7.2 years ago
Is there a way to adjust the borders of the heatmap output by the sigGeneSet function in the gage package? When I run my data (3 treated samples against 3 controls) using kegg.gs, I get very few significant hits, so when the heatmap file is generated, most of both the sample names (along the bottom) and the KEGG pathway names (along the right side) are clipped off... Is there some way to effectively "zoom out" so that more of the annotations are visible? Thanks, Alan [[alternative HTML version deleted]]
gage gage • 908 views
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Entering edit mode
Alan Derr ▴ 50
@alan-derr-5099
Last seen 7.2 years ago
(Sorry if this is a duplicate message. It looks like the original send of this message has the body removed. Anyway....) Is there a way to adjust the borders of the heatmap output by the sigGeneSet function in the gage package? When I run my data (3 treated samples against 3 controls) using kegg.gs, I get very few significant hits, so when the heatmap file is generated, most of both the sample names (along the bottom) and the KEGG pathway names (along the right side) are clipped off... Is there some way to effectively "zoom out" so that more of the annotations are visible? Thanks, Alan
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