EBImage in R-Cloud
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Guest User ★ 12k
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Last seen 6.9 years ago
How can I use EBImage on R-Cloud. It seems I have to install ImageMagic first, but how can I install it on R-Cloud? Thanks. -- output of sessionInfo(): biocLite("EBImage") Using R version 2.13.0, biocinstall version 2.8.4. Installing Bioconductor version 2.8 packages: [1] "EBImage" Please wait... Installing package(s) into '/net/nas20/rcloud_data/storage/wdir/...../RLibs' (as 'lib' is unspecified) trying URL 'http://mirrors.ebi.ac.uk/bioconductor/packages/2.8/bioc/sr c/contrib/EBImage_3.8.0.tar.gz' Content type 'application/x-gzip' length 5258014 bytes (5.0 Mb) opened URL ================================================== downloaded 5.0 Mb checking for Magick-config... no configure: error: "ImageMagick or ImageMagick includes not found!" The downloaded packages are in '/net/nas20/rcloud_data/storage/tempdir/RtmpVZTZl5/downloaded_ packages' Warning message: In install.packages(pkgs = pkgs, repos = repos, ...) : installation of package 'EBImage' had non-zero exit status -- Sent via the guest posting facility at bioconductor.org.
EBImage EBImage • 813 views
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Dan Tenenbaum ★ 8.2k
@dan-tenenbaum-4256
Last seen 5 months ago
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On Tue, Mar 13, 2012 at 12:54 AM, Nicole [guest] <guest at="" bioconductor.org=""> wrote: > > How can I use EBImage on R-Cloud. It seems I have to install ImageMagic first, but how can I install it on R-Cloud? > Thanks. Sounds like a question for the R-Cloud list: http://listserver.ebi.ac.uk/mailman/listinfo/rcloud Dan > > ?-- output of sessionInfo(): > > biocLite("EBImage") > Using R version 2.13.0, biocinstall version 2.8.4. > Installing Bioconductor version 2.8 packages: > [1] "EBImage" > Please wait... > > Installing package(s) into '/net/nas20/rcloud_data/storage/wdir/...../RLibs' > (as 'lib' is unspecified) > trying URL 'http://mirrors.ebi.ac.uk/bioconductor/packages/2.8/bioc/ src/contrib/EBImage_3.8.0.tar.gz' > Content type 'application/x-gzip' length 5258014 bytes (5.0 Mb) > opened URL > ================================================== > downloaded 5.0 Mb > > checking for Magick-config... no > configure: error: "ImageMagick or ImageMagick includes not found!" > > The downloaded packages are in > ? ? ? ?'/net/nas20/rcloud_data/storage/tempdir/RtmpVZTZl5/downloaded _packages' > Warning message: > In install.packages(pkgs = pkgs, repos = repos, ...) : > ?installation of package 'EBImage' had non-zero exit status > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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