Problems installing EBImage package
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@guest-user-4897
Last seen 6.9 years ago
Hello, we followed your EBImage installation documentation and tested gtk- demo, convert -version, pkg-config gtk+-2.0 --libs and Magick-config --libs (all without error messages) ImageMagick 6.7.5-1 Running R CMD INSTALL EBImage_3.11.2.tar.gz we compile everything apart from last step: ........... installing to /opt/local/opkg/lib/r/library/EBImage/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package 'EBImage' finding HTML links ... done EBImage-deprecated html EBImage html Image html blur html bwlabel html channel html combine html computeFeatures html display html distmap html drawCircle html drawable html equalize html feature-obsolete html fillHull html filter2 html floodFill html getFeatures html io html morphology html normalize html ocontour html paintObjects html propagate html rmObjects html spatial html stackObjects html thresh html tile html translate html watershed html ** building package indices ... ** testing if installed package can be loaded Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared library '/opt/local/opkg/lib/r/library/EBImage/libs/EBImage.so': ld.so.1: R: fatal: relocation error: file /opt/local/opkg/lib/r/library/EBImage/libs/EBImage.so: symbol DispatchImage: referenced symbol not found ERROR: loading failed Any idea? Thanks Marco Sassi Meteoswiss -- output of sessionInfo(): R version 2.11.1 (2010-05-31) sparc-sun-solaris2.10 locale: [1] /en_US.ISO8859-1/C/en_US.ISO8859-1/en_US.ISO8859-1/C/en_US.ISO8859-1 attached base packages: [1] stats graphics grDevices utils datasets methods base -- Sent via the guest posting facility at bioconductor.org.
convert EBImage convert EBImage • 695 views
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@wolfgang-huber-3550
Last seen 13 hours ago
EMBL European Molecular Biology Laborat…
Dear Marco my first suggestion is to upgrade to a more recent R, i.e. either R version 2.14.2 from 2012-02-29, or R 2.15.0 which is scheduled for March 30, if you can wait a few more days. Then, to make sure that you build your R from source using the same system resources (e.g. C compiler) as you use to build gtk+-2.0 and ImageMagick. Would you mind trying these and then report back whether or not that solved your problem? best wishes Wolfgang Mar/27/12 6:14 PM, Marco Sassi [guest] scripsit:: > > Hello, > we followed your EBImage installation documentation and tested gtk- demo, convert -version, pkg-config gtk+-2.0 --libs and Magick-config --libs (all without error messages) > > ImageMagick 6.7.5-1 > > > Running R CMD INSTALL EBImage_3.11.2.tar.gz > we compile everything apart from last step: > > ........... > installing to /opt/local/opkg/lib/r/library/EBImage/libs > ** R > ** inst > ** preparing package for lazy loading > ** help > *** installing help indices > converting help for package 'EBImage' > finding HTML links ... done > EBImage-deprecated html > EBImage html > Image html > blur html > bwlabel html > channel html > combine html > computeFeatures html > display html > distmap html > drawCircle html > drawable html > equalize html > feature-obsolete html > fillHull html > filter2 html > floodFill html > getFeatures html > io html > morphology html > normalize html > ocontour html > paintObjects html > propagate html > rmObjects html > spatial html > stackObjects html > thresh html > tile html > translate html > watershed html > ** building package indices ... > ** testing if installed package can be loaded > Error in dyn.load(file, DLLpath = DLLpath, ...) : > unable to load shared library '/opt/local/opkg/lib/r/library/EBImage/libs/EBImage.so': > ld.so.1: R: fatal: relocation error: file /opt/local/opkg/lib/r/library/EBImage/libs/EBImage.so: symbol DispatchImage: referenced symbol not found > ERROR: loading failed > > > Any idea? > Thanks > > Marco Sassi > Meteoswiss > > > -- output of sessionInfo(): > > > R version 2.11.1 (2010-05-31) > sparc-sun-solaris2.10 > > locale: > [1] /en_US.ISO8859-1/C/en_US.ISO8859-1/en_US.ISO8859-1/C/en_US.ISO8859-1 > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Best wishes Wolfgang Wolfgang Huber EMBL http://www.embl.de/research/units/genome_biology/huber
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