how GSEA phenotype label works?
1
0
Entering edit mode
wenhuo hu ▴ 200
@wenhuo-hu-5208
Last seen 6.5 years ago
United States
Hi all, I have a question about GSEA analysis. There is an item about phenotype lable in Java version GSEA, it is about the .cls data, with an extension, e.g. "WT~KO", or "KO~"WT". I tried both way, the results are quite different. The way described in the original paper on how GSEA works does not seem give an excuse how this parameter affect the results, and why this happened. Please help! Wenhuo Hu, MSKCC [[alternative HTML version deleted]]
• 2.0k views
ADD COMMENT
0
Entering edit mode
Paul Geeleher ★ 1.3k
@paul-geeleher-2679
Last seen 10.3 years ago
This isn't really a Bioconductor question, but for general bioinformatics questions you can try Biostar: http://biostar.stackexchange.com/ Paul. On Fri, Apr 6, 2012 at 12:49 PM, wenhuo hu <huwenhuo@gmail.com> wrote: > Hi all, > > I have a question about GSEA analysis. There is an item about phenotype > lable in Java version GSEA, it is about the .cls data, with an extension, > e.g. "WT~KO", or "KO~"WT". I tried both way, the results are quite > different. The way described in the original paper on how GSEA works does > not seem give an excuse how this parameter affect the results, and why this > happened. Please help! > > Wenhuo Hu, > MSKCC > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > -- Paul Geeleher (PhD Student) School of Mathematics, Statistics and Applied Mathematics National University of Ireland Galway Ireland -- www.bioinformaticstutorials.com [[alternative HTML version deleted]]
ADD COMMENT

Login before adding your answer.

Traffic: 562 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6