Entering edit mode
Dear list,
I was trying to install biomaRt package.
> biocLite('biomaRt')
Everything worked, but I had this warning:
Warning: unable to move temporary installation 'C:\Program
Files\R\R-2.15.0\library\file77847d9453b\XML' to 'C:\Program
Files\R\R-2.15.0\library\XML'
However,:
package 'biomaRt' successfully unpacked and MD5 sums checked
Then, when I was trying to load the library I had the following error:
> library(biomaRt)
Error in loadNamespace(i, c(lib.loc, .libPaths())) :
there is no package called 'XML'
Error: package/namespace load failed for 'biomaRt'
Enigmatically, there is no such directory 'file77847d9453b' in
'C:\Program Files\R\R-2.15.0\library'
I would appreciate an advise how to fix this error!
Best regards
Galina
> sessionInfo()
R version 2.15.0 (2012-03-30)
Platform: i386-pc-mingw32/i386 (32-bit)
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United
States.1252 LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C LC_TIME=English_United
States.1252
attached base packages:
[1] splines stats graphics grDevices utils datasets
methods base
other attached packages:
[1] BSgenome_1.24.0 GenomicRanges_1.8.3 Biostrings_2.24.1
IRanges_1.14.2 BiocGenerics_0.2.0 edgeR_2.6.0
limma_3.12.0
[8] BiocInstaller_1.4.3
loaded via a namespace (and not attached):
[1] RCurl_1.91-1.1 stats4_2.15.0 tools_2.15.0
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