On 04/30/2012 09:26 AM, Alejandro Quiroz wrote: > Hi Chris > > I'm Alejandro Quiroz, from the Department of Biostatistics at Harvard University > > Did you ever solve the issue about: > >> source('basicGSEA.R') > 'envir' chosen:<environment: r_globalenv=""> > encoding = "native.enc" chosen > Error: '\%' is an unrecognized escape in character string starting "Tag > \%" > > ? > > I'm having the same thing with R-GSEA from :http://www.broadinstitut e.org/cancer/software/gsea/wiki/index.php/R-GSEA_Readme Hi Alejandro -- Probably you should ask the people responsible for the script, but perhaps it helps to ensure that your 'locale' is C, e.g., Sys.setlocale(locale="C") on many systems. Also working through the 'encoding' argument to source() might be helpful, ensuring too that you have not inadvertently converted a simple text file to a file with an unexpected encoding. The output of sessionInfo() and a reproducible example are always helpful. Martin > I would greatly appreciate if you respond! > > Thanks > Alejandro > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Computational Biology Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: M1-B861 Telephone: 206 667-2793