Hi all, Any thoughts on that? Cheers, Nico Begin forwarded message: > From: Nicolas Delhomme <delhomme at="" embl.de=""> > Date: May 1, 2012 2:28:29 PM GMT+02:00 > To: bioc-devel at r-project.org > Subject: [Bioc-devel] Changes in the %in% function for DNAStringSet? > > Hi all, > > In R 2.15.0, Bioc 2.10, the following works: > > library(Biostrings) > c("TTGCGA","ATGGCT","ACACTG") %in% DNAStringSet(c("TTGCGA","ATGRCT","ACASTG")) > [1] TRUE FALSE FALSE >> sessionInfo()R version 2.15.0 (2012-03-30) > Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) > > locale: > [1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8 > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > other attached packages: > [1] Biostrings_2.24.1 IRanges_1.14.2 BiocGenerics_0.2.0 > > loaded via a namespace (and not attached): > [1] stats4_2.15.0 > > > While in Bioc 2.11 it fails: > > Error in match(x, table, nomatch = 0L) : > 'match' requires vector arguments >> sessionInfo() > R version 2.15.0 (2012-03-30) > Platform: x86_64-apple-darwin10.8.0 (64-bit) > > locale: > [1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8 > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > other attached packages: > [1] Biostrings_2.25.3 IRanges_1.15.7 BiocGenerics_0.3.0 > > loaded via a namespace (and not attached): > [1] stats4_2.15.0 > > > > I'd just like to know if that is that a change of API or not. If yes, I'd need to adapt my code that currently fails building. > > Cheers, > > Nico > > --------------------------------------------------------------- > Nicolas Delhomme > > Genome Biology Computational Support > > European Molecular Biology Laboratory > > Tel: +49 6221 387 8310 > Email: nicolas.delhomme at embl.de > Meyerhofstrasse 1 - Postfach 10.2209 > 69102 Heidelberg, Germany > > _______________________________________________ > Bioc-devel at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel --------------------------------------------------------------- Nicolas Delhomme Genome Biology Computational Support European Molecular Biology Laboratory Tel: +49 6221 387 8310 Email: nicolas.delhomme at embl.de Meyerhofstrasse 1 - Postfach 10.2209 69102 Heidelberg, Germany