BiomaRt returns empty set for getBM for celegans miRNA
0
0
Entering edit mode
Julie Zhu ★ 4.3k
@julie-zhu-3596
Last seen 5 months ago
United States
Dear biomaRt developers, The following getBM function call returns 0 record of miRNAs for c.elegans. It works fine for human. FYI, the martview website does not display any miRNA for c.elegans either. Could you please help? Many thanks! library(biomaRt) mart=useMart(biomart="ensembl",dataset="celegans_gene_ensembl") miRNA = getBM(c("ensembl_gene_id", "chromosome_name", "start_position", "end_position", "strand", "description", "gene_biotype"), filter = c("biotype"), values = "miRNA", mart = mart) Best regards, Julie
biomaRt biomaRt • 801 views
ADD COMMENT

Login before adding your answer.

Traffic: 434 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6