Help with adSplit package
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@luz-mayela-soto-5285
Last seen 9.6 years ago
Dear all, I'm trying to do some clustering analysis in a microarray expression data set, for that I was trying to implement the adSplit package. Even when running the example in the vignette, when trying to use the diana2means( ) function I get an error: > library(golubEsets) > data(Golub_Merge) > e <- exprs(Golub_Merge) > vars <- apply(e, 1, var) > e <- e[vars > quantile(vars,0.9),] > > diana2means(e) Error in .C(twins, n, jp, as.double(x2), dv, dis = double(if (C.keep.diss) length(dv) else 1), : 'name' must be a string (of length 1) or native symbol reference Could anyone point me to the right direction on to how to fix this? My session information: R version 2.15.0 (2012-03-30) Platform: i386-pc-mingw32/i386 (32-bit) locale: [1] LC_COLLATE=English_United Kingdom.1252 LC_CTYPE=English_United Kingdom.1252 [3] LC_MONETARY=English_United Kingdom.1252 LC_NUMERIC=C [5] LC_TIME=English_United Kingdom.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] chicken.db_2.7.1 org.Gg.eg.db_2.7.1 golubEsets_1.4.11 adSplit_1.26.0 BiocInstaller_1.4.4 [6] UsingR_0.1-18 MASS_7.3-18 SpeCond_1.10.0 RColorBrewer_1.0-5 hwriter_1.3 [11] fields_6.6.3 spam_0.29-1 mclust_3.4.11 hgu133a2.db_2.7.1 org.Hs.eg.db_2.7.1 [16] annaffy_1.28.0 KEGG.db_2.7.1 GO.db_2.7.1 RSQLite_0.11.1 DBI_0.2-5 [21] AnnotationDbi_1.18.0 genefilter_1.38.0 limma_3.12.0 affy_1.34.0 Biobase_2.16.0 [26] IRanges_1.14.3 BiocGenerics_0.2.0 loaded via a namespace (and not attached): [1] affyio_1.24.0 annotate_1.34.0 cluster_1.14.2 multtest_2.12.0 preprocessCore_1.18.0 [6] splines_2.15.0 stats4_2.15.0 survival_2.36-14 tools_2.15.0 xtable_1.7-0 [11] zlibbioc_1.2.0 Kind regards, Mayela Soto Licenciatura en Ciencias Genomicas UNAM [[alternative HTML version deleted]]
Microarray GO Clustering adSplit Microarray GO Clustering adSplit • 770 views
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