Question: Useful information about Ensembl release 67 mart databases
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gravatar for Thomas Maurel
6.7 years ago by
Thomas Maurel770
United Kingdom
Thomas Maurel770 wrote:
Dear all, The new Ensembl marts for release 67 are live on www.ensembl.org and www.biomart.org. The following improvements and modifications have been made : Ensembl Genes 67 : Added new species Nile Tilapia (Oreochromis niloticus) Updated Human assembly to GRCh37.p7, Pig (Sus scrofa) assembly to Sscrofa10.2 and updated Squirrel (Spermophilus tridecemlineatus) to spetri2. Caenorhabditis elegans assembly name has been updated to WBcel215 Added the Ensembl exon id attribute for all the species in the features page. The miRNA Gene type filter for Caenorhabditis elegans has been reinstated Ensembl Variation 67: Added new variation species Macaque (Macaca mulatta) New Human somatic structural variation dataset with data from COSMIC 58. Updated Pig, Zebrafish, Rat, Chimpanzee and Orangutan to dbSNP 136 Updated the human somatic variation database to COSMIC 58 data SIFT and Polyphen score are masked out for this release due to a known bug. These scores will be reintroduced for release 68. The "peptide shift" attribute has been renamed to "protein allele" The "structural variation accession" attribute has been renamed to "structural variation name" and it is now linked to the structural variation tab. The structural variation data for Sus scrofa is absent for this releas Ensembl Regulation 67: Added the segmentation feature data in the filter and attribute sections Vega 47 : Updated Human assembly to GRCh37.p7 Added the quick go data in the filter and attribute sections for Human and Zebrafish. A complete list of the changes in release 67 can be found at http://www.ensembl.org/info/website/news.html Regards, Thomas -- Thomas Maurel Bioinformatician - Ensembl Production Team European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus, Hinxton Cambridge - CB10 1SD - UK [[alternative HTML version deleted]]
ADD COMMENTlink modified 6.7 years ago • written 6.7 years ago by Thomas Maurel770
Answer: Useful information about Ensembl release 67 mart databases
0
gravatar for Thomas Maurel
6.7 years ago by
Thomas Maurel770
United Kingdom
Thomas Maurel770 wrote:
Dear all, The new Ensembl marts for release 67 are live on www.ensembl.org and www.biomart.org. The following improvements and modifications have been made : Ensembl Genes 67 : Added new species Nile Tilapia (Oreochromis niloticus) Updated Human assembly to GRCh37.p7, Pig (Sus scrofa) assembly to Sscrofa10.2 and updated Squirrel (Spermophilus tridecemlineatus) to spetri2. Caenorhabditis elegans assembly name has been updated to WBcel215 Added the Ensembl exon id attribute for all the species in the features page. The miRNA Gene type filter for Caenorhabditis elegans has been reinstated Ensembl Variation 67: Added new variation species Macaque (Macaca mulatta) New Human somatic structural variation dataset with data from COSMIC 58. Updated Pig, Zebrafish, Rat, Chimpanzee and Orangutan to dbSNP 136 Updated the human somatic variation database to COSMIC 58 data SIFT and Polyphen score are masked out for this release due to a known bug. These scores will be reintroduced for release 68. The "peptide shift" attribute has been renamed to "protein allele" The "structural variation accession" attribute has been renamed to "structural variation name" and it is now linked to the structural variation tab. The structural variation data for Sus scrofa is absent for this releas Ensembl Regulation 67: Added the segmentation feature data in the filter and attribute sections Vega 47 : Updated Human assembly to GRCh37.p7 Added the quick go data in the filter and attribute sections for Human and Zebrafish. A complete list of the changes in release 67 can be found at http://www.ensembl.org/info/website/news.html Regards, Thomas -- Thomas Maurel Bioinformatician - Ensembl Production Team European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus, Hinxton Cambridge - CB10 1SD - UK [[alternative HTML version deleted]]
ADD COMMENTlink written 6.7 years ago by Thomas Maurel770
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