GEOquery loading error
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I was able to download and install GEOquery, but can't seem to load it into R. See the following error message included. Also included some potentially useful info. I use R version: 2.15.0, Bioconductor 2.10. Thanks. -- output of sessionInfo(): >library(GEOquery) Error in loadNamespace(i[[1L]], c(lib.loc, .libPaths())) : there is no package called ???RCurl??? Error: package/namespace load failed for ???GEOquery??? >traceback() 2: stop(gettextf("package/namespace load failed for %s", sQuote(package)), call. = FALSE, domain = NA) 1: library(GEOquery) > biocLite("RCurl") BioC_mirror: http://bioconductor.org Using R version 2.15, BiocInstaller version 1.4.4. Installing package(s) 'RCurl' Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/2.15 Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/2.15 > sessionInfo() R version 2.15.0 (2012-03-30) Platform: i386-pc-mingw32/i386 (32-bit) locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] hgu133plus2hsrefseq.db_15.1.0 hgu133plus2hsrefseqcdf_15.1.0 [3] hgu133plus2cdf_2.10.0 hgu133plus2.db_2.7.1 [5] org.Hs.eg.db_2.7.1 RSQLite_0.11.1 [7] DBI_0.2-5 altcdfenvs_2.18.0 [9] hypergraph_1.28.0 graph_1.34.0 [11] Biostrings_2.24.1 IRanges_1.14.3 [13] makecdfenv_1.34.0 ecoliprobe_2.10.0 [15] gcrma_2.28.0 arrayQualityMetrics_3.12.0 [17] ecoliLeucine_1.2.8 ecolicdf_2.10.0 [19] AnnotationDbi_1.18.0 affy_1.34.0 [21] Biobase_2.16.0 BiocGenerics_0.2.0 [23] BiocInstaller_1.4.4 loaded via a namespace (and not attached): [1] affyio_1.24.0 affyPLM_1.32.0 annotate_1.34.0 [4] beadarray_2.6.0 BeadDataPackR_1.8.0 Cairo_1.5-1 [7] cluster_1.14.2 colorspace_1.1-1 genefilter_1.38.0 [10] grid_2.15.0 Hmisc_3.9-3 hwriter_1.3 [13] KernSmooth_2.23-7 lattice_0.20-6 latticeExtra_0.6-19 [16] limma_3.12.0 plyr_1.7.1 preprocessCore_1.18.0 [19] RColorBrewer_1.0-5 reshape2_1.2.1 setRNG_2011.11-2 [22] splines_2.15.0 stats4_2.15.0 stringr_0.6 [25] survival_2.36-14 SVGAnnotation_0.9-0 tools_2.15.0 [28] vsn_3.24.0 XML_3.9-4.1 xtable_1.7-0 [31] zlibbioc_1.2.0 Warning message: package ???RCurl??? is not available (for R version 2.15.0) -- Sent via the guest posting facility at bioconductor.org.
hgu133plus2 GEOquery BiocInstaller hgu133plus2 GEOquery BiocInstaller • 1.5k views
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Dan Tenenbaum ★ 8.2k
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Hello Jian, On Fri, May 25, 2012 at 3:39 PM, Jian Zhang [guest] <guest at="" bioconductor.org=""> wrote: > > I was able to download and install GEOquery, ?but can't seem to load it into R. See the following error message included. ?Also included some potentially useful info. > > I use R version: 2.15.0, Bioconductor 2.10. > > Thanks. > > ?-- output of sessionInfo(): > >>library(GEOquery) > Error in loadNamespace(i[[1L]], c(lib.loc, .libPaths())) : > ?there is no package called ???RCurl??? > Error: package/namespace load failed for ???GEOquery??? > >>traceback() > 2: stop(gettextf("package/namespace load failed for %s", sQuote(package)), > ? ? ? call. = FALSE, domain = NA) > 1: library(GEOquery) > >> biocLite("RCurl") > BioC_mirror: http://bioconductor.org > Using R version 2.15, BiocInstaller version 1.4.4. > Installing package(s) 'RCurl' > Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/2.15 > Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/2.15 > It doesn't look like you are showing the full output of this command. Did it complete successfully or was there an error? GEOquery is failing because RCurl is not installed, so it's important to know the full output of biocLite("RCurl") Dan >> sessionInfo() > R version 2.15.0 (2012-03-30) > Platform: i386-pc-mingw32/i386 (32-bit) > > locale: > [1] LC_COLLATE=English_United States.1252 ?LC_CTYPE=English_United States.1252 > [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C > [5] LC_TIME=English_United States.1252 > > attached base packages: > [1] stats ? ? graphics ?grDevices utils ? ? datasets ?methods ? base > > other attached packages: > ?[1] hgu133plus2hsrefseq.db_15.1.0 hgu133plus2hsrefseqcdf_15.1.0 > ?[3] hgu133plus2cdf_2.10.0 ? ? ? ? hgu133plus2.db_2.7.1 > ?[5] org.Hs.eg.db_2.7.1 ? ? ? ? ? ?RSQLite_0.11.1 > ?[7] DBI_0.2-5 ? ? ? ? ? ? ? ? ? ? altcdfenvs_2.18.0 > ?[9] hypergraph_1.28.0 ? ? ? ? ? ? graph_1.34.0 > [11] Biostrings_2.24.1 ? ? ? ? ? ? IRanges_1.14.3 > [13] makecdfenv_1.34.0 ? ? ? ? ? ? ecoliprobe_2.10.0 > [15] gcrma_2.28.0 ? ? ? ? ? ? ? ? ?arrayQualityMetrics_3.12.0 > [17] ecoliLeucine_1.2.8 ? ? ? ? ? ?ecolicdf_2.10.0 > [19] AnnotationDbi_1.18.0 ? ? ? ? ?affy_1.34.0 > [21] Biobase_2.16.0 ? ? ? ? ? ? ? ?BiocGenerics_0.2.0 > [23] BiocInstaller_1.4.4 > > loaded via a namespace (and not attached): > ?[1] affyio_1.24.0 ? ? ? ? affyPLM_1.32.0 ? ? ? ?annotate_1.34.0 > ?[4] beadarray_2.6.0 ? ? ? BeadDataPackR_1.8.0 ? Cairo_1.5-1 > ?[7] cluster_1.14.2 ? ? ? ?colorspace_1.1-1 ? ? ?genefilter_1.38.0 > [10] grid_2.15.0 ? ? ? ? ? Hmisc_3.9-3 ? ? ? ? ? hwriter_1.3 > [13] KernSmooth_2.23-7 ? ? lattice_0.20-6 ? ? ? ?latticeExtra_0.6-19 > [16] limma_3.12.0 ? ? ? ? ?plyr_1.7.1 ? ? ? ? ? ?preprocessCore_1.18.0 > [19] RColorBrewer_1.0-5 ? ?reshape2_1.2.1 ? ? ? ?setRNG_2011.11-2 > [22] splines_2.15.0 ? ? ? ?stats4_2.15.0 ? ? ? ? stringr_0.6 > [25] survival_2.36-14 ? ? ?SVGAnnotation_0.9-0 ? tools_2.15.0 > [28] vsn_3.24.0 ? ? ? ? ? ?XML_3.9-4.1 ? ? ? ? ? xtable_1.7-0 > [31] zlibbioc_1.2.0 > > Warning message: > package ???RCurl??? is not available (for R version 2.15.0) > > > > > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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Guess I missed the end: Warning message: package ?RCurl? is not available (for R version 2.15.0) Jian -----Original Message----- From: Dan Tenenbaum [mailto:dtenenba@fhcrc.org] Sent: Friday, May 25, 2012 4:01 PM To: Jian Zhang [guest] Cc: bioconductor at r-project.org; Zhang, Jian Subject: Re: [BioC] GEOquery loading error Hello Jian, On Fri, May 25, 2012 at 3:39 PM, Jian Zhang [guest] <guest at="" bioconductor.org=""> wrote: > > I was able to download and install GEOquery, ?but can't seem to load it into R. See the following error message included. ?Also included some potentially useful info. > > I use R version: 2.15.0, Bioconductor 2.10. > > Thanks. > > ?-- output of sessionInfo(): > >>library(GEOquery) > Error in loadNamespace(i[[1L]], c(lib.loc, .libPaths())) : > ?there is no package called ???RCurl??? > Error: package/namespace load failed for ???GEOquery??? > >>traceback() > 2: stop(gettextf("package/namespace load failed for %s", sQuote(package)), > ? ? ? call. = FALSE, domain = NA) > 1: library(GEOquery) > >> biocLite("RCurl") > BioC_mirror: http://bioconductor.org > Using R version 2.15, BiocInstaller version 1.4.4. > Installing package(s) 'RCurl' > Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/2.15 > Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/2.15 > It doesn't look like you are showing the full output of this command. Did it complete successfully or was there an error? GEOquery is failing because RCurl is not installed, so it's important to know the full output of biocLite("RCurl") Dan >> sessionInfo() > R version 2.15.0 (2012-03-30) > Platform: i386-pc-mingw32/i386 (32-bit) > > locale: > [1] LC_COLLATE=English_United States.1252 ?LC_CTYPE=English_United States.1252 > [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C > [5] LC_TIME=English_United States.1252 > > attached base packages: > [1] stats ? ? graphics ?grDevices utils ? ? datasets ?methods ? base > > other attached packages: > ?[1] hgu133plus2hsrefseq.db_15.1.0 hgu133plus2hsrefseqcdf_15.1.0 > ?[3] hgu133plus2cdf_2.10.0 ? ? ? ? hgu133plus2.db_2.7.1 > ?[5] org.Hs.eg.db_2.7.1 ? ? ? ? ? ?RSQLite_0.11.1 > ?[7] DBI_0.2-5 ? ? ? ? ? ? ? ? ? ? altcdfenvs_2.18.0 > ?[9] hypergraph_1.28.0 ? ? ? ? ? ? graph_1.34.0 > [11] Biostrings_2.24.1 ? ? ? ? ? ? IRanges_1.14.3 > [13] makecdfenv_1.34.0 ? ? ? ? ? ? ecoliprobe_2.10.0 > [15] gcrma_2.28.0 ? ? ? ? ? ? ? ? ?arrayQualityMetrics_3.12.0 > [17] ecoliLeucine_1.2.8 ? ? ? ? ? ?ecolicdf_2.10.0 > [19] AnnotationDbi_1.18.0 ? ? ? ? ?affy_1.34.0 > [21] Biobase_2.16.0 ? ? ? ? ? ? ? ?BiocGenerics_0.2.0 > [23] BiocInstaller_1.4.4 > > loaded via a namespace (and not attached): > ?[1] affyio_1.24.0 ? ? ? ? affyPLM_1.32.0 ? ? ? ?annotate_1.34.0 > ?[4] beadarray_2.6.0 ? ? ? BeadDataPackR_1.8.0 ? Cairo_1.5-1 > ?[7] cluster_1.14.2 ? ? ? ?colorspace_1.1-1 ? ? ?genefilter_1.38.0 > [10] grid_2.15.0 ? ? ? ? ? Hmisc_3.9-3 ? ? ? ? ? hwriter_1.3 > [13] KernSmooth_2.23-7 ? ? lattice_0.20-6 ? ? ? ?latticeExtra_0.6-19 > [16] limma_3.12.0 ? ? ? ? ?plyr_1.7.1 ? ? ? ? ? ?preprocessCore_1.18.0 > [19] RColorBrewer_1.0-5 ? ?reshape2_1.2.1 ? ? ? ?setRNG_2011.11-2 > [22] splines_2.15.0 ? ? ? ?stats4_2.15.0 ? ? ? ? stringr_0.6 > [25] survival_2.36-14 ? ? ?SVGAnnotation_0.9-0 ? tools_2.15.0 > [28] vsn_3.24.0 ? ? ? ? ? ?XML_3.9-4.1 ? ? ? ? ? xtable_1.7-0 > [31] zlibbioc_1.2.0 > > Warning message: > package ???RCurl??? is not available (for R version 2.15.0) > > > > > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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OK, see below: On Fri, May 25, 2012 at 5:01 PM, Zhang, Jian <jianz at="" amgen.com=""> wrote: > Guess I missed the end: > > Warning message: > package ?RCurl? is not available (for R version 2.15.0) > > Jian > > -----Original Message----- > From: Dan Tenenbaum [mailto:dtenenba at fhcrc.org] > Sent: Friday, May 25, 2012 4:01 PM > To: Jian Zhang [guest] > Cc: bioconductor at r-project.org; Zhang, Jian > Subject: Re: [BioC] GEOquery loading error > > Hello Jian, > > On Fri, May 25, 2012 at 3:39 PM, Jian Zhang [guest] > <guest at="" bioconductor.org=""> wrote: >> >> I was able to download and install GEOquery, ?but can't seem to load it into R. See the following error message included. ?Also included some potentially useful info. >> >> I use R version: 2.15.0, Bioconductor 2.10. >> >> Thanks. >> >> ?-- output of sessionInfo(): >> >>>library(GEOquery) >> Error in loadNamespace(i[[1L]], c(lib.loc, .libPaths())) : >> ?there is no package called ???RCurl??? >> Error: package/namespace load failed for ???GEOquery??? >> >>>traceback() >> 2: stop(gettextf("package/namespace load failed for %s", sQuote(package)), >> ? ? ? call. = FALSE, domain = NA) >> 1: library(GEOquery) >> >>> biocLite("RCurl") >> BioC_mirror: http://bioconductor.org >> Using R version 2.15, BiocInstaller version 1.4.4. >> Installing package(s) 'RCurl' >> Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/2.15 >> Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/2.15 I think this is the problem right here. RCurl is in this repository (as you can see if you put that link into a browser) but biocLite() can't see it. Are you behind a proxy or something? Try starting R like this: R --internet2 and see if that works better. If that fails you can always download http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/2.15/RCurl_1.91 -1.1.zip but biocLite() is very much the preferred approach. Dan >> > > It doesn't look like you are showing the full output of this command. > Did it complete successfully or was there an error? GEOquery is > failing because RCurl is not installed, so it's important to know the > full output of > biocLite("RCurl") > > Dan > > >>> sessionInfo() >> R version 2.15.0 (2012-03-30) >> Platform: i386-pc-mingw32/i386 (32-bit) >> >> locale: >> [1] LC_COLLATE=English_United States.1252 ?LC_CTYPE=English_United States.1252 >> [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C >> [5] LC_TIME=English_United States.1252 >> >> attached base packages: >> [1] stats ? ? graphics ?grDevices utils ? ? datasets ?methods ? base >> >> other attached packages: >> ?[1] hgu133plus2hsrefseq.db_15.1.0 hgu133plus2hsrefseqcdf_15.1.0 >> ?[3] hgu133plus2cdf_2.10.0 ? ? ? ? hgu133plus2.db_2.7.1 >> ?[5] org.Hs.eg.db_2.7.1 ? ? ? ? ? ?RSQLite_0.11.1 >> ?[7] DBI_0.2-5 ? ? ? ? ? ? ? ? ? ? altcdfenvs_2.18.0 >> ?[9] hypergraph_1.28.0 ? ? ? ? ? ? graph_1.34.0 >> [11] Biostrings_2.24.1 ? ? ? ? ? ? IRanges_1.14.3 >> [13] makecdfenv_1.34.0 ? ? ? ? ? ? ecoliprobe_2.10.0 >> [15] gcrma_2.28.0 ? ? ? ? ? ? ? ? ?arrayQualityMetrics_3.12.0 >> [17] ecoliLeucine_1.2.8 ? ? ? ? ? ?ecolicdf_2.10.0 >> [19] AnnotationDbi_1.18.0 ? ? ? ? ?affy_1.34.0 >> [21] Biobase_2.16.0 ? ? ? ? ? ? ? ?BiocGenerics_0.2.0 >> [23] BiocInstaller_1.4.4 >> >> loaded via a namespace (and not attached): >> ?[1] affyio_1.24.0 ? ? ? ? affyPLM_1.32.0 ? ? ? ?annotate_1.34.0 >> ?[4] beadarray_2.6.0 ? ? ? BeadDataPackR_1.8.0 ? Cairo_1.5-1 >> ?[7] cluster_1.14.2 ? ? ? ?colorspace_1.1-1 ? ? ?genefilter_1.38.0 >> [10] grid_2.15.0 ? ? ? ? ? Hmisc_3.9-3 ? ? ? ? ? hwriter_1.3 >> [13] KernSmooth_2.23-7 ? ? lattice_0.20-6 ? ? ? ?latticeExtra_0.6-19 >> [16] limma_3.12.0 ? ? ? ? ?plyr_1.7.1 ? ? ? ? ? ?preprocessCore_1.18.0 >> [19] RColorBrewer_1.0-5 ? ?reshape2_1.2.1 ? ? ? ?setRNG_2011.11-2 >> [22] splines_2.15.0 ? ? ? ?stats4_2.15.0 ? ? ? ? stringr_0.6 >> [25] survival_2.36-14 ? ? ?SVGAnnotation_0.9-0 ? tools_2.15.0 >> [28] vsn_3.24.0 ? ? ? ? ? ?XML_3.9-4.1 ? ? ? ? ? xtable_1.7-0 >> [31] zlibbioc_1.2.0 >> >> Warning message: >> package ???RCurl??? is not available (for R version 2.15.0) >> >> >> >> >> >> -- >> Sent via the guest posting facility at bioconductor.org. >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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Dan, You are right on! I am behind a firewall of the company. Starting with R --internet2 worked for downloading RCurl, and the subsequent library(GEOquery) worked. Thanks a lot! Jian -----Original Message----- From: Dan Tenenbaum [mailto:dtenenba@fhcrc.org] Sent: Friday, May 25, 2012 5:31 PM To: Zhang, Jian Cc: Jian Zhang [guest]; bioconductor at r-project.org Subject: Re: [BioC] GEOquery loading error OK, see below: On Fri, May 25, 2012 at 5:01 PM, Zhang, Jian <jianz at="" amgen.com=""> wrote: > Guess I missed the end: > > Warning message: > package ?RCurl? is not available (for R version 2.15.0) > > Jian > > -----Original Message----- > From: Dan Tenenbaum [mailto:dtenenba at fhcrc.org] > Sent: Friday, May 25, 2012 4:01 PM > To: Jian Zhang [guest] > Cc: bioconductor at r-project.org; Zhang, Jian > Subject: Re: [BioC] GEOquery loading error > > Hello Jian, > > On Fri, May 25, 2012 at 3:39 PM, Jian Zhang [guest] > <guest at="" bioconductor.org=""> wrote: >> >> I was able to download and install GEOquery, ?but can't seem to load it into R. See the following error message included. ?Also included some potentially useful info. >> >> I use R version: 2.15.0, Bioconductor 2.10. >> >> Thanks. >> >> ?-- output of sessionInfo(): >> >>>library(GEOquery) >> Error in loadNamespace(i[[1L]], c(lib.loc, .libPaths())) : >> ?there is no package called ???RCurl??? >> Error: package/namespace load failed for ???GEOquery??? >> >>>traceback() >> 2: stop(gettextf("package/namespace load failed for %s", sQuote(package)), >> ? ? ? call. = FALSE, domain = NA) >> 1: library(GEOquery) >> >>> biocLite("RCurl") >> BioC_mirror: http://bioconductor.org >> Using R version 2.15, BiocInstaller version 1.4.4. >> Installing package(s) 'RCurl' >> Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/2.15 >> Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/2.15 I think this is the problem right here. RCurl is in this repository (as you can see if you put that link into a browser) but biocLite() can't see it. Are you behind a proxy or something? Try starting R like this: R --internet2 and see if that works better. If that fails you can always download http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/2.15/RCurl_1.91 -1.1.zip but biocLite() is very much the preferred approach. Dan >> > > It doesn't look like you are showing the full output of this command. > Did it complete successfully or was there an error? GEOquery is > failing because RCurl is not installed, so it's important to know the > full output of > biocLite("RCurl") > > Dan > > >>> sessionInfo() >> R version 2.15.0 (2012-03-30) >> Platform: i386-pc-mingw32/i386 (32-bit) >> >> locale: >> [1] LC_COLLATE=English_United States.1252 ?LC_CTYPE=English_United States.1252 >> [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C >> [5] LC_TIME=English_United States.1252 >> >> attached base packages: >> [1] stats ? ? graphics ?grDevices utils ? ? datasets ?methods ? base >> >> other attached packages: >> ?[1] hgu133plus2hsrefseq.db_15.1.0 hgu133plus2hsrefseqcdf_15.1.0 >> ?[3] hgu133plus2cdf_2.10.0 ? ? ? ? hgu133plus2.db_2.7.1 >> ?[5] org.Hs.eg.db_2.7.1 ? ? ? ? ? ?RSQLite_0.11.1 >> ?[7] DBI_0.2-5 ? ? ? ? ? ? ? ? ? ? altcdfenvs_2.18.0 >> ?[9] hypergraph_1.28.0 ? ? ? ? ? ? graph_1.34.0 >> [11] Biostrings_2.24.1 ? ? ? ? ? ? IRanges_1.14.3 >> [13] makecdfenv_1.34.0 ? ? ? ? ? ? ecoliprobe_2.10.0 >> [15] gcrma_2.28.0 ? ? ? ? ? ? ? ? ?arrayQualityMetrics_3.12.0 >> [17] ecoliLeucine_1.2.8 ? ? ? ? ? ?ecolicdf_2.10.0 >> [19] AnnotationDbi_1.18.0 ? ? ? ? ?affy_1.34.0 >> [21] Biobase_2.16.0 ? ? ? ? ? ? ? ?BiocGenerics_0.2.0 >> [23] BiocInstaller_1.4.4 >> >> loaded via a namespace (and not attached): >> ?[1] affyio_1.24.0 ? ? ? ? affyPLM_1.32.0 ? ? ? ?annotate_1.34.0 >> ?[4] beadarray_2.6.0 ? ? ? BeadDataPackR_1.8.0 ? Cairo_1.5-1 >> ?[7] cluster_1.14.2 ? ? ? ?colorspace_1.1-1 ? ? ?genefilter_1.38.0 >> [10] grid_2.15.0 ? ? ? ? ? Hmisc_3.9-3 ? ? ? ? ? hwriter_1.3 >> [13] KernSmooth_2.23-7 ? ? lattice_0.20-6 ? ? ? ?latticeExtra_0.6-19 >> [16] limma_3.12.0 ? ? ? ? ?plyr_1.7.1 ? ? ? ? ? ?preprocessCore_1.18.0 >> [19] RColorBrewer_1.0-5 ? ?reshape2_1.2.1 ? ? ? ?setRNG_2011.11-2 >> [22] splines_2.15.0 ? ? ? ?stats4_2.15.0 ? ? ? ? stringr_0.6 >> [25] survival_2.36-14 ? ? ?SVGAnnotation_0.9-0 ? tools_2.15.0 >> [28] vsn_3.24.0 ? ? ? ? ? ?XML_3.9-4.1 ? ? ? ? ? xtable_1.7-0 >> [31] zlibbioc_1.2.0 >> >> Warning message: >> package ???RCurl??? is not available (for R version 2.15.0) >> >> >> >> >> >> -- >> Sent via the guest posting facility at bioconductor.org. >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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