Question: oligo and pdInfoBuilder
7.3 years ago by
Simon Melov • 340
Simon Melov • 340 wrote:
I've been beating my head against the wall for several hours trying to see why I cant build a library for a nimblegen expression array, using the oligo and pdInfoBuilder packages. I dont see any errors when building the library for a 12plex yeast genome expression array.... makePdInfoPackage(seed, destDir = "/Library/Frameworks/R.framework/Versions/2.15/Resources/library/") ====================================================================== ========== Building annotation package for Nimblegen Expression Array NDF: 100718_Scer_EXP.ndf XYS: 532785A01_Chip6.330.2012.5.8_532.xys ====================================================================== ========== Parsing file: 100718_Scer_EXP.ndf... OK Parsing file: 532785A01_Chip6.330.2012.5.8_532.xys... OK Merging NDF and XYS files... OK Preparing contents for featureSet table... OK Preparing contents for bgfeature table... OK Preparing contents for pmfeature table... OK Creating package in /Library/Frameworks/R.framework/Versions/2.15/Reso urces/library//pd.100718.scer.exp Inserting 5777 rows into table featureSet... OK Inserting 137040 rows into table pmfeature... OK Counting rows in featureSet Counting rows in pmfeature Creating index idx_pmfsetid on pmfeature... OK Creating index idx_pmfid on pmfeature... OK Creating index idx_fsfsetid on featureSet... OK Saving DataFrame object for PM. Done. > but when I try to use the library in oligo, it fails for some reason library(pd.100718.scer.exp) Error in library(pd.100718.scer.exp) : 'pd.100718.scer.exp' is not a valid installed package > Can anyone help? I'm at my wits end...
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