Question: GOSemSim comparison between species
0
gravatar for Katharine Coyte
7.5 years ago by
Katharine Coyte10 wrote:
Hi, I'd like to use GOSemSim to calculate the functional similarity between yeast and human proteins. It looks like it can compare human with human and yeast with yeast, but not proteins between species. Having looked at the documentation I assume the important change is to create a new information contents file that combines the yeast and human ones. However, I can't work out how to do this. Is this the correct approach to take, and does anyone have any advice on how to do so? Thanks and best wishes, Katharine Coyte 1st Year DPhil Candidate Systems Biology DTC University of Oxford [[alternative HTML version deleted]]
yeast gosemsim • 620 views
ADD COMMENTlink modified 7.5 years ago by Dan Tenenbaum8.2k • written 7.5 years ago by Katharine Coyte10
Answer: GOSemSim comparison between species
0
gravatar for Dan Tenenbaum
7.5 years ago by
Dan Tenenbaum8.2k
United States
Dan Tenenbaum8.2k wrote:
CC'ing the maintainer of GOSemSim. Dan On Tue, Jun 5, 2012 at 3:02 AM, Katharine Coyte <katharine.coyte at="" jesus.ox.ac.uk=""> wrote: > Hi, > > I'd like to use GOSemSim to calculate the functional similarity between yeast and human proteins. It looks like it can compare human with human and yeast with yeast, but not proteins between species. > > Having looked at the documentation I assume the important change is to create a new information contents file that combines the yeast and human ones. However, I can't work out how to do this. Is this the correct approach to take, and does anyone have any advice on how to do so? > > Thanks and best wishes, > > Katharine Coyte > > 1st Year DPhil Candidate > Systems Biology DTC > University of Oxford > > ? ? ? ?[[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
ADD COMMENTlink written 7.5 years ago by Dan Tenenbaum8.2k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 380 users visited in the last hour