gplots error
1
0
Entering edit mode
Guest User ★ 13k
@guest-user-4897
Last seen 9.6 years ago
Yesterday a new version gdata package (2.8.2) was released. After upgrading the package, gplots stopped working. Error : object ???nobs??? is not exported by 'namespace:gdata' ERROR: lazy loading failed for package ???gplots??? The only way I had to fix this was to uninstall both packages and install an older version manually. Regards -- output of sessionInfo(): R version 2.14.1 (2011-12-22) Platform: x86_64-unknown-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=C LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] grid stats graphics grDevices utils datasets methods [8] base other attached packages: [1] gdata_2.8.2 gtools_2.6.2 -- Sent via the guest posting facility at bioconductor.org.
• 1.2k views
ADD COMMENT
0
Entering edit mode
Dan Tenenbaum ★ 8.2k
@dan-tenenbaum-4256
Last seen 3.2 years ago
United States
On Thu, Jun 7, 2012 at 5:58 AM, German Gonzalez [guest] <guest at="" bioconductor.org=""> wrote: > > Yesterday a new version gdata package (2.8.2) was released. After upgrading the package, gplots stopped working. > > Error : object ???nobs??? is not exported by 'namespace:gdata' > ERROR: lazy loading failed for package ???gplots??? > > The only way I had to fix this was to uninstall both packages and install an older version manually. > Our build machines have gdata 2.10.0 installed. The "new" version of gdata is 2.8.2. According to R, 2.8.2 is not newer than 2.10.0: > package_version("2.8.2") > package_version("2.10.0") [1] FALSE Hence gdata was not updated on our build machines. I will update it manually. Many packages were affected, in devel and release; they ought to be corrected by mid-morning tomorrow Seattle time. Thanks, Dan > Regards > > > ?-- output of sessionInfo(): > > R version 2.14.1 (2011-12-22) > Platform: x86_64-unknown-linux-gnu (64-bit) > > locale: > ?[1] LC_CTYPE=en_US.UTF-8 ? ? ? LC_NUMERIC=C > ?[3] LC_TIME=en_US.UTF-8 ? ? ? ?LC_COLLATE=en_US.UTF-8 > ?[5] LC_MONETARY=en_US.UTF-8 ? ?LC_MESSAGES=en_US.UTF-8 > ?[7] LC_PAPER=C ? ? ? ? ? ? ? ? LC_NAME=C > ?[9] LC_ADDRESS=C ? ? ? ? ? ? ? LC_TELEPHONE=C > [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C > > attached base packages: > [1] grid ? ? ?stats ? ? graphics ?grDevices utils ? ? datasets ?methods > [8] base > > other attached packages: > [1] gdata_2.8.2 ? ? ? gtools_2.6.2 > > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
ADD COMMENT
0
Entering edit mode
Thank you very much! 2012/6/7 Dan Tenenbaum <dtenenba@fhcrc.org> > On Thu, Jun 7, 2012 at 5:58 AM, German Gonzalez [guest] > <guest@bioconductor.org> wrote: > > > > Yesterday a new version gdata package (2.8.2) was released. After > upgrading the package, gplots stopped working. > > > > Error : object ‘nobs’ is not exported by 'namespace:gdata' > > ERROR: lazy loading failed for package ‘gplots’ > > > > The only way I had to fix this was to uninstall both packages and > install an older version manually. > > > > Our build machines have gdata 2.10.0 installed. The "new" version of > gdata is 2.8.2. > > According to R, 2.8.2 is not newer than 2.10.0: > > > package_version("2.8.2") > package_version("2.10.0") > [1] FALSE > > Hence gdata was not updated on our build machines. I will update it > manually. > Many packages were affected, in devel and release; they ought to be > corrected by mid-morning tomorrow Seattle time. > > Thanks, > Dan > > > > > Regards > > > > > > -- output of sessionInfo(): > > > > R version 2.14.1 (2011-12-22) > > Platform: x86_64-unknown-linux-gnu (64-bit) > > > > locale: > > [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C > > [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 > > [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 > > [7] LC_PAPER=C LC_NAME=C > > [9] LC_ADDRESS=C LC_TELEPHONE=C > > [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C > > > > attached base packages: > > [1] grid stats graphics grDevices utils datasets methods > > [8] base > > > > other attached packages: > > [1] gdata_2.8.2 gtools_2.6.2 > > > > > > -- > > Sent via the guest posting facility at bioconductor.org. > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor@r-project.org > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > -- Lic. Germán A. González Tel: +54-0351-4938000 int. 145 Grupo de Minería de Datos en Biociencias - UCC Website: http://sites.google.com/site/biologicaldatamininggroup/Home/ Mail address: Av. Armada Argentina 3555 - Córdoba - CP 5017 - Argentina [[alternative HTML version deleted]]
ADD REPLY

Login before adding your answer.

Traffic: 573 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6