Question: biomaRt installation error ??
7.3 years ago by
Alyaa Mahmoud • 440
Alyaa Mahmoud • 440 wrote:
Hi All I am having a problem installing biomaRt. Did the package names change or sth ?? I install biomart normally from biocLite source ("http://bioconductor.org/biocLite) biocLite ("biomaRt") but I get this erros (XML and RCurl): ERROR: configuration failed for package 'XML' * removing '/home/alyaa/R/x86_64-pc-linux-gnu-library/2.11/XML' During startup - Warning message: Setting LC_CTYPE failed, using "C" * installing *source* package 'RCurl' ... checking for curl-config... no Cannot find curl-config ERROR: configuration failed for package 'RCurl' * removing '/home/alyaa/R/x86_64-pc-linux-gnu-library/2.11/RCurl' During startup - Warning message: Setting LC_CTYPE failed, using "C" ERROR: dependencies 'XML', 'RCurl' are not available for package 'biomaRt' I then try to install RCurl or XML independently, but I get the same error: ERROR: configuration failed for package 'RCurl' * removing '/home/alyaa/R/x86_64-pc-linux-gnu-library/2.11/RCurl' The downloaded packages are in '/tmp/Rtmp6dsDAX/downloaded_packages' Warning message: In install.packages("RCurl") : installation of package 'RCurl' had non-zero exit status I was using biomart normally 3-4 months ago so I am not sure if sth has been updated or so ?? any ideas ? Thanks a lot Alyaa -- Alyaa Mahmoud "Love all, trust a few, do wrong to none"- Shakespeare [[alternative HTML version deleted]]
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