On 29 June 2012 19:10, Laurent Gatto <laurent.gatto at="" gmail.com=""> wrote: > Dear Gavin, > > The issue was the result of compiler/linker error and required a fresh > mzR build, which is not available through biocLite. ...which is *now* available through biocLite. > Best wishes, > > Laurent > > On 27 June 2012 10:27, Laurent Gatto <laurent.gatto at="" gmail.com=""> wrote: >> On 27 June 2012 10:21, Gavin Blackburn <gavin.blackburn at="" strath.ac.uk=""> wrote: >>> Hi Laurent, >>> >>> Thanks very much, I'll check the Rcpp list to see when it is solved and will downgrade it for now. >> >> It is not clear (at least to me) what happens [1]; it might fix itself >> with new Rcpp and mzR binaries. I will post an update here, anyway. >> >> Best wishes, >> >> Laurent >> >> [1] http://lists.r-forge.r-project.org/pipermail/rcpp- devel/2012-June/thread.html#3940 >> >>> Cheers, >>> >>> Gavin. >>> >>> -----Original Message----- >>> From: Laurent Gatto [mailto:laurent.gatto at gmail.com] >>> Sent: 26 June 2012 17:38 >>> To: Gavin Blackburn [guest] >>> Cc: bioconductor at r-project.org; Gavin Blackburn >>> Subject: Re: [BioC] mzR error >>> >>> On 26 June 2012 17:19, Laurent Gatto <laurent.gatto at="" gmail.com=""> wrote: >>>> Dear Gavin, >>>> >>>> I can't reproduce this, but I do not have the same configuration at >>>> hand for the moment - this could be an incompatibility with the latest >>>> Rcpp. >>> >>> Ok, I can now reproduce on a Windows box with mzR 1.2.1 (latest >>> stable) and Rcpp 0.9.12. Downgrading to Rcpp 0.9.10 [1] fixes the issue. I will bring it up on the Rcpp list. >>> >>> Thank you for the report. >>> >>> Laurent >>> >>> [1] http://cran.us.r-project.org/bin/windows/contrib/2.13/Rcpp_0.9.10.zip >>> >>> >>>> What version of mzR have you - packageVersion("mzR") >>>> >>>> Best wishes, >>>> >>>> Laurent >>>> >>>> On 26 June 2012 16:07, Gavin Blackburn [guest] <guest at="" bioconductor.org=""> wrote: >>>>> >>>>> We are getting the following error when trying to install and run mzR on a 64-bit Windows 7 machine: >>>>>> library(mzR) >>>>> Loading required package: Rcpp >>>>> Error : .onLoad failed in loadNamespace() for 'mzR', details: >>>>> ?call: value[[3L]](cond) >>>>> ?error: failed to load module Ramp from package mzR could not find >>>>> function "errorOccured" >>>>> Error: package/namespace load failed for ???mzR??? >>>>> >>>>> >>>>> Do you know what might be causing it? >>>>> >>>>> Cheers, >>>>> >>>>> Gavin. >>>>> >>>>> >>>>> ?-- output of sessionInfo(): >>>>> >>>>> ?sessionInfo() >>>>> R version 2.15.1 (2012-06-22) >>>>> Platform: x86_64-pc-mingw32/x64 (64-bit) >>>>> >>>>> locale: >>>>> [1] LC_COLLATE=English_United Kingdom.1252 [2] >>>>> LC_CTYPE=English_United Kingdom.1252 [3] LC_MONETARY=English_United >>>>> Kingdom.1252 [4] LC_NUMERIC=C [5] LC_TIME=English_United Kingdom.1252 >>>>> >>>>> attached base packages: >>>>> [1] stats ? ? graphics ?grDevices utils ? ? datasets ?methods ? base >>>>> >>>>> other attached packages: >>>>> [1] Rcpp_0.9.12 ? ? ? ? BiocInstaller_1.4.7 >>>>> >>>>> loaded via a namespace (and not attached): >>>>> [1] Biobase_2.16.0 ? ? BiocGenerics_0.2.0 tools_2.15.1 >>>>> >>>>> -- >>>>> Sent via the guest posting facility at bioconductor.org. >>>>> >>>>> _______________________________________________ >>>>> Bioconductor mailing list >>>>> Bioconductor at r-project.org >>>>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>>>> Search the archives: >>>>> http://news.gmane.org/gmane.science.biology.informatics.conductor >>>> >>>> >>>> >>>> -- >>>> [ Laurent Gatto | slashhome.be ] >>> >>> >>> >>> -- >>> [ Laurent Gatto | slashhome.be ] >> >> >> >> -- >> [ Laurent Gatto | slashhome.be ] > > > > -- > [ Laurent Gatto | slashhome.be ] -- [ Laurent Gatto | slashhome.be ]