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Question: goseq installation - BiasedUrn is not available
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gravatar for steve Shen
5.5 years ago by
steve Shen70
steve Shen70 wrote:
Hi All, Can someone help me out? The system is the newest version of mac. Thanks in advance, Steve > source("http://bioconductor.org/biocLite.R") > biocLite("goseq") BioC_mirror: http://bioconductor.org Using R version 2.15, BiocInstaller version 1.4.7. Warning: unable to access index for repository http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2 .15 Installing package(s) 'goseq' Warning: unable to access index for repository http://lib.stat.cmu.edu/R/CRAN/bin/macosx/leopard/contrib/2.15 Warning: unable to access index for repository http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2 .15 Warning: dependency ‘BiasedUrn’ is not available trying URL ' http://www.bioconductor.org/packages/2.10/bioc/bin/macosx/leopard/cont rib/2.15/goseq_1.8.0.tgz ' Content type 'application/x-gzip' length 765907 bytes (747 Kb) opened URL ================================================== downloaded 747 Kb The downloaded binary packages are in /var/folders/yj/z_hh_10d05z7f8crppm1j8xc0000gn/T//Rtmpyxvaqu/downloade d_packages Warning: unable to access index for repository http://lib.stat.cmu.edu/R/CRAN/bin/macosx/leopard/contrib/2.15 Warning: unable to access index for repository http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2 .15 > sessionInfo() R version 2.15.1 (2012-06-22) Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] edgeR_2.6.8 limma_3.12.1 BiocInstaller_1.4.7 loaded via a namespace (and not attached): [1] tools_2.15.1 > [[alternative HTML version deleted]]
ADD COMMENTlink modified 5.5 years ago by Dan Tenenbaum ♦♦ 8.2k • written 5.5 years ago by steve Shen70
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gravatar for Dan Tenenbaum
5.5 years ago by
Dan Tenenbaum ♦♦ 8.2k
United States
Dan Tenenbaum ♦♦ 8.2k wrote:
On Mon, Jul 2, 2012 at 10:32 PM, steve Shen <shen.sq at="" gmail.com=""> wrote: > Hi All, > > Can someone help me out? The system is the newest version of mac. > > Thanks in advance, > Steve > >> source("http://bioconductor.org/biocLite.R") >> biocLite("goseq") > BioC_mirror: http://bioconductor.org > Using R version 2.15, BiocInstaller version 1.4.7. > Warning: unable to access index for repository > http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib /2.15 > Installing package(s) 'goseq' > Warning: unable to access index for repository > http://lib.stat.cmu.edu/R/CRAN/bin/macosx/leopard/contrib/2.15 > Warning: unable to access index for repository > http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib /2.15 > Warning: dependency ?BiasedUrn? is not available > trying URL ' > http://www.bioconductor.org/packages/2.10/bioc/bin/macosx/leopard/co ntrib/2.15/goseq_1.8.0.tgz > ' > Content type 'application/x-gzip' length 765907 bytes (747 Kb) > opened URL > ================================================== > downloaded 747 Kb > > > The downloaded binary packages are in > > /var/folders/yj/z_hh_10d05z7f8crppm1j8xc0000gn/T//Rtmpyxvaqu/downloa ded_packages > Warning: unable to access index for repository > http://lib.stat.cmu.edu/R/CRAN/bin/macosx/leopard/contrib/2.15 > Warning: unable to access index for repository > http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib /2.15 >> sessionInfo() > R version 2.15.1 (2012-06-22) > Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) > > locale: > [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > other attached packages: > [1] edgeR_2.6.8 limma_3.12.1 BiocInstaller_1.4.7 > > loaded via a namespace (and not attached): > [1] tools_2.15.1 >> > Looks like the CRAN mirror at CMU is down. Try chooseCRANmirror() and pick a different one. Dan > [[alternative HTML version deleted]] > > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
ADD COMMENTlink written 5.5 years ago by Dan Tenenbaum ♦♦ 8.2k
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