BIoconductor AMI with R version 2.15.1
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Jeff Knisley ▴ 10
@jeff-knisley-5389
Last seen 9.6 years ago
First off, thank you for not only the excellent bioconductor package, but also for the AMI for EC2. Although I primarily work with Python, I really like bioconductor and use it quite a bit. I'm about to launch into another AMI-based project, however, and I noticed that the AMI is R version 2.15.0, which is problematic because I need to run Rcpp and need a couple of packages (e.g,. forecast) that use Rcpp, which is now >= 2.15.1. So before I do a lot on my own, I was wondering (a) how best to upgrade AMI to 2.15.1 ( I can log in with SSH ) and (b) if the Rstudio interface will need to be reconfigured. Just thought I'd ask first. Thanks! Jeff [[alternative HTML version deleted]]
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Dan Tenenbaum ★ 8.2k
@dan-tenenbaum-4256
Last seen 3.1 years ago
United States
Hi Jeff, On Tue, Jul 10, 2012 at 11:35 AM, Jeff Knisley <knisleyj.etsu at="" gmail.com=""> wrote: > First off, thank you for not only the excellent bioconductor package, but > also for the AMI for EC2. Although I primarily work with Python, I really > like bioconductor and use it quite a bit. > > I'm about to launch into another AMI-based project, however, and I noticed > that the AMI is R version 2.15.0, which is problematic because I need to > run Rcpp and need a couple of packages (e.g,. forecast) that use Rcpp, > which is now >= 2.15.1. > > So before I do a lot on my own, I was wondering (a) how best to upgrade > AMI to 2.15.1 ( I can log in with SSH ) and (b) if the Rstudio interface > will need to be reconfigured. I will update the Bioconductor 2.10 AMI to use R 2.15.1 and will post an updated AMI ID later today. (The Bioconductor 2.11 AMI already uses R 2.15.1). Thanks, Dan > > Just thought I'd ask first. > > Thanks! > > Jeff > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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On Tue, Jul 10, 2012 at 11:42 AM, Dan Tenenbaum <dtenenba at="" fhcrc.org=""> wrote: > Hi Jeff, > > On Tue, Jul 10, 2012 at 11:35 AM, Jeff Knisley <knisleyj.etsu at="" gmail.com=""> wrote: >> First off, thank you for not only the excellent bioconductor package, but >> also for the AMI for EC2. Although I primarily work with Python, I really >> like bioconductor and use it quite a bit. >> >> I'm about to launch into another AMI-based project, however, and I noticed >> that the AMI is R version 2.15.0, which is problematic because I need to >> run Rcpp and need a couple of packages (e.g,. forecast) that use Rcpp, >> which is now >= 2.15.1. >> >> So before I do a lot on my own, I was wondering (a) how best to upgrade >> AMI to 2.15.1 ( I can log in with SSH ) and (b) if the Rstudio interface >> will need to be reconfigured. > > I will update the Bioconductor 2.10 AMI to use R 2.15.1 and will post > an updated AMI ID later today. (The Bioconductor 2.11 AMI already uses > R 2.15.1). > The Bioconductor 2.10 AMI has been updated to use R 2.15.1 and all installed packages have been updated to the most recent release version. The new AMI-id is available on our AMI page: http://bioconductor.org/help/bioconductor-cloud-ami/#ami_ids Thanks, Dan > Thanks, > Dan > > >> >> Just thought I'd ask first. >> >> Thanks! >> >> Jeff >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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