Question: EBImage installation problem on Linux
6.3 years ago by
Guest User • 12k
Guest User • 12k wrote:
Hi Group, I am trying to install the EBImage package on my linux box. I have the latest version of Red Hat Linux, GTK 2.10.4 and Image magick. The error which I get is as follows...Could anyone give me an idea what I am doing wrong? Please find the error message and session info below. I have already read an earlier post regarding the same issue (https://stat.ethz.ch/pipermail/bioconductor/2009-July/028666.html) and seen the response but I using latest version anyway. Thanks in advance. Jayangshu -- output of sessionInfo(): [root at CS-ORIS-SVR09 local]# R CMD INSTALL EBImage_3.12.0.tar.gz * installing to library ??/usr/local/lib64/R/library?? * installing *source* package ??EBImage?? ... checking for Magick-config... no configure: error: "ImageMagick or ImageMagick includes not found!" ERROR: configuration failed for package ??EBImage?? * removing ??/usr/local/lib64/R/library/EBImage?? [root at CS-ORIS-SVR09 local]# R R version 2.15.0 (2012-03-30) Copyright (C) 2012 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-unknown-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > source("http://bioconductor.org/biocLite.R") BiocInstaller version 1.4.7, ?biocLite for help > biocLite("EBImage") BioC_mirror: http://bioconductor.org Using R version 2.15, BiocInstaller version 1.4.7. Installing package(s) 'EBImage' trying URL 'http://www.bioconductor.org/packages/2.10/bioc/src/contrib /EBImage_3.12.0.tar.gz' Content type 'application/x-gzip' length 4738660 bytes (4.5 Mb) opened URL ================================================== downloaded 4.5 Mb * installing *source* package ??EBImage?? ... checking for Magick-config... no configure: error: "ImageMagick or ImageMagick includes not found!" ERROR: configuration failed for package ??EBImage?? * removing ??/usr/local/lib64/R/library/EBImage?? The downloaded source packages are in ??/tmp/Rtmpp42hTM/downloaded_packages?? Updating HTML index of packages in '.Library' Making packages.html ... done Old packages: 'caTools', 'gplots', 'gregmisc', 'RCurl' Update all/some/none? [a/s/n]: > sessionInfo() R version 2.15.0 (2012-03-30) Platform: x86_64-unknown-linux-gnu (64-bit) locale:  LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C  LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8  LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8  LC_PAPER=C LC_NAME=C  LC_ADDRESS=C LC_TELEPHONE=C  LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages:  stats graphics grDevices utils datasets methods base other attached packages:  BiocInstaller_1.4.7 loaded via a namespace (and not attached):  tools_2.15.0 -- Sent via the guest posting facility at bioconductor.org.
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