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Last seen 9.6 years ago
Hello all,
Thank you for your development of Bioconductor and the many useful
packages. I am new to microarray analysis, and have been using
beadarray to analyze some of our data after going through the vignette
with several example datasets. The beadsummary files produced for our
lab do not have a channel for the log2 transform of the data. Is there
a way to add that channel in R?
If not, is there a way place to add that data to the text files in
Excel?
Thank you for your assistance!
-- output of sessionInfo():
R version 2.15.1 (2012-06-22)
Platform: i386-apple-darwin9.8.0/i386 (32-bit)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] BiocInstaller_1.4.7 beadarray_2.6.0 ggplot2_0.9.1
Biobase_2.16.0 BiocGenerics_0.2.0
loaded via a namespace (and not attached):
[1] AnnotationDbi_1.18.1 BeadDataPackR_1.8.0 colorspace_1.1-1
DBI_0.2-5 dichromat_1.2-4
[6] digest_0.5.2 grid_2.15.1 IRanges_1.14.4
labeling_0.1 limma_3.12.1
[11] MASS_7.3-19 memoise_0.1 munsell_0.3
plyr_1.7.1 proto_0.3-9.2
[16] RColorBrewer_1.0-5 reshape2_1.2.1 RSQLite_0.11.1
scales_0.2.1 stats4_2.15.1
[21] stringr_0.6 tools_2.15.1
--
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