Question: oligo and pd.aragene.1.1.st annotation
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gravatar for Stephen Rolfe
7.2 years ago by
Stephen Rolfe20 wrote:
I have a set of files from the new Aragene-1_1-st microarrays. I am using oligo to analyse these but have hit a problem with the annotation. I have the most up-to-date packages and don't hit any error messages. However, using getNetAffx doesn't seem to add annotation data to my rma normalised data set. The feature labels are all there and the probsetids have been set. All of the other data are NA. Any insight would be much appreciated. Eventually I want to analyse the data in limma. (I tried building my own pd files using pdinfoBuilder as an alternative, but hit a bunch of error messages that I couldn't overcome.) Thanks for your help Steve Rolfe R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows" > library("pd.aragene.1.1.st") > library(oligo) > library(Biobase) > celfiles<-list.celfiles() > affyRaw<-read.celfiles(files=celfiles) Platform design info loaded. Reading in : WT16HypCon1_01_A05.CEL Reading in : WT16HypCon2_02_A07.CEL Reading in : WT16HypCon3_03_B05.CEL Reading in : WT16HypInf1_04_B07.CEL Reading in : WT16HypInf2_05_C05.CEL Reading in : WT16HypInf3_06_C07.CEL Reading in : WT16RootCon1_07_D05.CEL Reading in : WT16RootCon2_08_D07.CEL Reading in : WT16RootCon3_09_E05.CEL Reading in : WT16RootInf1_10_E07.CEL Reading in : WT16RootInf2_11_F05.CEL Reading in : WT16RootInf3_12_F07.CEL Reading in : WT26HypCon1_13_H07.CEL Reading in : WT26HypCon2_14_G07.CEL Reading in : WT26HypCon3_15_H05.CEL Reading in : WT26HypInf1_16_G05.CEL Reading in : WT26HypInf2_17_A05.CEL Reading in : WT26HypInf3_18_A07.CEL Reading in : WT26RootCon1_19_B05.CEL Reading in : WT26RootCon2_20_B07.CEL Reading in : WT26RootCon3_21_C05.CEL Reading in : WT26RootInf1_22_C07.CEL Reading in : WT26RootInf2_23_D05.CEL Reading in : WT26RootInf3_24_D07.CEL > eset<-rma(affyRaw,target="core") Background correcting Normalizing Calculating Expression > featureData(eset)<-getNetAffx(eset,"transcript") > eset ExpressionSet (storageMode: lockedEnvironment) assayData: 38408 features, 24 samples element names: exprs protocolData rowNames: WT16HypCon1_01_A05.CEL WT16HypCon2_02_A07.CEL ... WT26RootInf3_24_D07.CEL (24 total) varLabels: exprs dates varMetadata: labelDescription channel phenoData rowNames: WT16HypCon1_01_A05.CEL WT16HypCon2_02_A07.CEL ... WT26RootInf3_24_D07.CEL (24 total) varLabels: index varMetadata: labelDescription channel featureData featureNames: 13320001 13320003 ... 13545870 (38408 total) fvarLabels: transcriptclusterid probesetid ... category (18 total) fvarMetadata: labelDescription experimentData: use 'experimentData(object)' Annotation: pd.aragene.1.1.st > featureData(eset) An object of class "AnnotatedDataFrame" rowNames: 13320001 13320003 ... 13545870 (38408 total) varLabels: transcriptclusterid probesetid ... category (18 total) varMetadata: labelDescription > varLabels(featureData(eset)) [1] "transcriptclusterid" "probesetid" "seqname" [4] "strand" "start" "stop" [7] "totalprobes" "geneassignment" "mrnaassignment" [10] "swissprot" "unigene" "gobiologicalprocess" [13] "gocellularcomponent" "gomolecularfunction" "pathway" [16] "proteindomains" "crosshybtype" "category" > pData(featureData(eset))[1000:1002,] transcriptclusterid probesetid seqname strand start stop totalprobes 13321999 13321999 13321999 <na> <na> NA NA NA 13322001 13322001 13322001 <na> <na> NA NA NA 13322003 13322003 13322003 <na> <na> NA NA NA geneassignment 13321999 --- // --- // intron-exon control // --- // --- 13322001 --- // --- // intron-exon control // --- // --- 13322003 --- // --- // intron-exon control // --- // --- mrnaassignment 13321999 --- // --- // intron-exon control // --- // --- // --- // --- // --- // --- // 13322001 --- // --- // intron-exon control // --- // --- // --- // --- // --- // --- // 13322003 --- // --- // intron-exon control // --- // --- // --- // --- // --- // --- // swissprot unigene gobiologicalprocess gocellularcomponent 13321999 NA NA NA NA 13322001 NA NA NA NA 13322003 NA NA NA NA gomolecularfunction pathway proteindomains crosshybtype 13321999 NA NA NA NA 13322001 NA NA NA NA 13322003 NA NA NA NA category 13321999 normgene->intron 13322001 normgene->intron 13322003 normgene->intron > [[alternative HTML version deleted]]
ADD COMMENTlink modified 7.2 years ago by Marc Carlson7.2k • written 7.2 years ago by Stephen Rolfe20
Answer: oligo and pd.aragene.1.1.st annotation
0
gravatar for Marc Carlson
7.2 years ago by
Marc Carlson7.2k
United States
Marc Carlson7.2k wrote:
Hi Stephen, It sounds like you might need to make an annotation package for your new platform. You can see a vignette that shows how to do that here: http://www.bioconductor.org/packages/2.10/bioc/vignettes/AnnotationDbi /inst/doc/SQLForge.pdf Please let me know if there are any other issues that crop up. Marc On 08/02/2012 09:20 AM, Stephen Rolfe wrote: > I have a set of files from the new Aragene-1_1-st microarrays. I am using > oligo to analyse these but have hit a problem with the annotation. > > I have the most up-to-date packages and don't hit any error messages. > However, using getNetAffx doesn't seem to add annotation data to my rma > normalised data set. > > The feature labels are all there and the probsetids have been set. All of > the other data are NA. > > > > Any insight would be much appreciated. Eventually I want to analyse the data > in limma. > > (I tried building my own pd files using pdinfoBuilder as an alternative, but > hit a bunch of error messages that I couldn't overcome.) > > Thanks for your help > > Steve Rolfe > > > > > > R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows" > > > >> library("pd.aragene.1.1.st") >> library(oligo) >> library(Biobase) >> celfiles<-list.celfiles() >> affyRaw<-read.celfiles(files=celfiles) > Platform design info loaded. > > Reading in : WT16HypCon1_01_A05.CEL > > Reading in : WT16HypCon2_02_A07.CEL > > Reading in : WT16HypCon3_03_B05.CEL > > Reading in : WT16HypInf1_04_B07.CEL > > Reading in : WT16HypInf2_05_C05.CEL > > Reading in : WT16HypInf3_06_C07.CEL > > Reading in : WT16RootCon1_07_D05.CEL > > Reading in : WT16RootCon2_08_D07.CEL > > Reading in : WT16RootCon3_09_E05.CEL > > Reading in : WT16RootInf1_10_E07.CEL > > Reading in : WT16RootInf2_11_F05.CEL > > Reading in : WT16RootInf3_12_F07.CEL > > Reading in : WT26HypCon1_13_H07.CEL > > Reading in : WT26HypCon2_14_G07.CEL > > Reading in : WT26HypCon3_15_H05.CEL > > Reading in : WT26HypInf1_16_G05.CEL > > Reading in : WT26HypInf2_17_A05.CEL > > Reading in : WT26HypInf3_18_A07.CEL > > Reading in : WT26RootCon1_19_B05.CEL > > Reading in : WT26RootCon2_20_B07.CEL > > Reading in : WT26RootCon3_21_C05.CEL > > Reading in : WT26RootInf1_22_C07.CEL > > Reading in : WT26RootInf2_23_D05.CEL > > Reading in : WT26RootInf3_24_D07.CEL > >> eset<-rma(affyRaw,target="core") > Background correcting > > Normalizing > > Calculating Expression > >> featureData(eset)<-getNetAffx(eset,"transcript") >> eset > ExpressionSet (storageMode: lockedEnvironment) > > assayData: 38408 features, 24 samples > > element names: exprs > > protocolData > > rowNames: WT16HypCon1_01_A05.CEL WT16HypCon2_02_A07.CEL ... > > WT26RootInf3_24_D07.CEL (24 total) > > varLabels: exprs dates > > varMetadata: labelDescription channel > > phenoData > > rowNames: WT16HypCon1_01_A05.CEL WT16HypCon2_02_A07.CEL ... > > WT26RootInf3_24_D07.CEL (24 total) > > varLabels: index > > varMetadata: labelDescription channel > > featureData > > featureNames: 13320001 13320003 ... 13545870 (38408 total) > > fvarLabels: transcriptclusterid probesetid ... category (18 total) > > fvarMetadata: labelDescription > > experimentData: use 'experimentData(object)' > > Annotation: pd.aragene.1.1.st > >> featureData(eset) > An object of class "AnnotatedDataFrame" > > rowNames: 13320001 13320003 ... 13545870 (38408 total) > > varLabels: transcriptclusterid probesetid ... category (18 total) > > varMetadata: labelDescription > >> varLabels(featureData(eset)) > [1] "transcriptclusterid" "probesetid" "seqname" > > [4] "strand" "start" "stop" > > [7] "totalprobes" "geneassignment" "mrnaassignment" > > [10] "swissprot" "unigene" "gobiologicalprocess" > > [13] "gocellularcomponent" "gomolecularfunction" "pathway" > > [16] "proteindomains" "crosshybtype" "category" > >> pData(featureData(eset))[1000:1002,] > transcriptclusterid probesetid seqname strand start stop > totalprobes > > 13321999 13321999 13321999<na> <na> NA NA > NA > > 13322001 13322001 13322001<na> <na> NA NA > NA > > 13322003 13322003 13322003<na> <na> NA NA > NA > > geneassignment > > 13321999 --- // --- // intron-exon control // --- // --- > > 13322001 --- // --- // intron-exon control // --- // --- > > 13322003 --- // --- // intron-exon control // --- // --- > > > mrnaassignment > > 13321999 --- // --- // intron-exon control // --- // --- // --- // --- // > --- // --- // > > 13322001 --- // --- // intron-exon control // --- // --- // --- // --- // > --- // --- // > > 13322003 --- // --- // intron-exon control // --- // --- // --- // --- // > --- // --- // > > swissprot unigene gobiologicalprocess gocellularcomponent > > 13321999 NA NA NA NA > > 13322001 NA NA NA NA > > 13322003 NA NA NA NA > > gomolecularfunction pathway proteindomains crosshybtype > > 13321999 NA NA NA NA > > 13322001 NA NA NA NA > > 13322003 NA NA NA NA > > category > > 13321999 normgene->intron > > 13322001 normgene->intron > > 13322003 normgene->intron > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
ADD COMMENTlink written 7.2 years ago by Marc Carlson7.2k
and getNetAffx returns whatever Affymetrix provides with their annotation files... These are quite new arrays, so it's likely that on future releases they'll add more information. b On 2 August 2012 18:33, Marc Carlson <mcarlson at="" fhcrc.org=""> wrote: > Hi Stephen, > > It sounds like you might need to make an annotation package for your new > platform. You can see a vignette that shows how to do that here: > > http://www.bioconductor.org/packages/2.10/bioc/vignettes/AnnotationD bi/inst/doc/SQLForge.pdf > > Please let me know if there are any other issues that crop up. > > > Marc > > > > > On 08/02/2012 09:20 AM, Stephen Rolfe wrote: >> >> I have a set of files from the new Aragene-1_1-st microarrays. I am using >> oligo to analyse these but have hit a problem with the annotation. >> >> I have the most up-to-date packages and don't hit any error messages. >> However, using getNetAffx doesn't seem to add annotation data to my rma >> normalised data set. >> >> The feature labels are all there and the probsetids have been set. All of >> the other data are NA. >> >> >> >> Any insight would be much appreciated. Eventually I want to analyse the >> data >> in limma. >> >> (I tried building my own pd files using pdinfoBuilder as an alternative, >> but >> hit a bunch of error messages that I couldn't overcome.) >> >> Thanks for your help >> >> Steve Rolfe >> >> >> >> >> >> R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows" >> >> >> >>> library("pd.aragene.1.1.st") >>> library(oligo) >>> library(Biobase) >>> celfiles<-list.celfiles() >>> affyRaw<-read.celfiles(files=celfiles) >> >> Platform design info loaded. >> >> Reading in : WT16HypCon1_01_A05.CEL >> >> Reading in : WT16HypCon2_02_A07.CEL >> >> Reading in : WT16HypCon3_03_B05.CEL >> >> Reading in : WT16HypInf1_04_B07.CEL >> >> Reading in : WT16HypInf2_05_C05.CEL >> >> Reading in : WT16HypInf3_06_C07.CEL >> >> Reading in : WT16RootCon1_07_D05.CEL >> >> Reading in : WT16RootCon2_08_D07.CEL >> >> Reading in : WT16RootCon3_09_E05.CEL >> >> Reading in : WT16RootInf1_10_E07.CEL >> >> Reading in : WT16RootInf2_11_F05.CEL >> >> Reading in : WT16RootInf3_12_F07.CEL >> >> Reading in : WT26HypCon1_13_H07.CEL >> >> Reading in : WT26HypCon2_14_G07.CEL >> >> Reading in : WT26HypCon3_15_H05.CEL >> >> Reading in : WT26HypInf1_16_G05.CEL >> >> Reading in : WT26HypInf2_17_A05.CEL >> >> Reading in : WT26HypInf3_18_A07.CEL >> >> Reading in : WT26RootCon1_19_B05.CEL >> >> Reading in : WT26RootCon2_20_B07.CEL >> >> Reading in : WT26RootCon3_21_C05.CEL >> >> Reading in : WT26RootInf1_22_C07.CEL >> >> Reading in : WT26RootInf2_23_D05.CEL >> >> Reading in : WT26RootInf3_24_D07.CEL >> >>> eset<-rma(affyRaw,target="core") >> >> Background correcting >> >> Normalizing >> >> Calculating Expression >> >>> featureData(eset)<-getNetAffx(eset,"transcript") >>> eset >> >> ExpressionSet (storageMode: lockedEnvironment) >> >> assayData: 38408 features, 24 samples >> >> element names: exprs >> >> protocolData >> >> rowNames: WT16HypCon1_01_A05.CEL WT16HypCon2_02_A07.CEL ... >> >> WT26RootInf3_24_D07.CEL (24 total) >> >> varLabels: exprs dates >> >> varMetadata: labelDescription channel >> >> phenoData >> >> rowNames: WT16HypCon1_01_A05.CEL WT16HypCon2_02_A07.CEL ... >> >> WT26RootInf3_24_D07.CEL (24 total) >> >> varLabels: index >> >> varMetadata: labelDescription channel >> >> featureData >> >> featureNames: 13320001 13320003 ... 13545870 (38408 total) >> >> fvarLabels: transcriptclusterid probesetid ... category (18 total) >> >> fvarMetadata: labelDescription >> >> experimentData: use 'experimentData(object)' >> >> Annotation: pd.aragene.1.1.st >> >>> featureData(eset) >> >> An object of class "AnnotatedDataFrame" >> >> rowNames: 13320001 13320003 ... 13545870 (38408 total) >> >> varLabels: transcriptclusterid probesetid ... category (18 total) >> >> varMetadata: labelDescription >> >>> varLabels(featureData(eset)) >> >> [1] "transcriptclusterid" "probesetid" "seqname" >> >> [4] "strand" "start" "stop" >> >> [7] "totalprobes" "geneassignment" "mrnaassignment" >> >> [10] "swissprot" "unigene" "gobiologicalprocess" >> >> [13] "gocellularcomponent" "gomolecularfunction" "pathway" >> >> [16] "proteindomains" "crosshybtype" "category" >> >>> pData(featureData(eset))[1000:1002,] >> >> transcriptclusterid probesetid seqname strand start stop >> totalprobes >> >> 13321999 13321999 13321999<na> <na> NA NA >> NA >> >> 13322001 13322001 13322001<na> <na> NA NA >> NA >> >> 13322003 13322003 13322003<na> <na> NA NA >> NA >> >> geneassignment >> >> 13321999 --- // --- // intron-exon control // --- // --- >> >> 13322001 --- // --- // intron-exon control // --- // --- >> >> 13322003 --- // --- // intron-exon control // --- // --- >> >> >> mrnaassignment >> >> 13321999 --- // --- // intron-exon control // --- // --- // --- // --- // >> --- // --- // >> >> 13322001 --- // --- // intron-exon control // --- // --- // --- // --- // >> --- // --- // >> >> 13322003 --- // --- // intron-exon control // --- // --- // --- // --- // >> --- // --- // >> >> swissprot unigene gobiologicalprocess gocellularcomponent >> >> 13321999 NA NA NA NA >> >> 13322001 NA NA NA NA >> >> 13322003 NA NA NA NA >> >> gomolecularfunction pathway proteindomains crosshybtype >> >> 13321999 NA NA NA NA >> >> 13322001 NA NA NA NA >> >> 13322003 NA NA NA NA >> >> category >> >> 13321999 normgene->intron >> >> 13322001 normgene->intron >> >> 13322003 normgene->intron >> >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor > > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor
ADD REPLYlink written 7.2 years ago by Benilton Carvalho4.3k
Thanks for the advice. I think my confusion arose probeset vs core in rma (and an interaction between oligo and affy). The affy files do contain AGI indices, gene symbols and descriptions and I've not yet got those into the analysis, but am trying the alternatives below. Cheers Steve On 07/08/2012 01:43, Benilton Carvalho wrote: > and getNetAffx returns whatever Affymetrix provides with their > annotation files... These are quite new arrays, so it's likely that on > future releases they'll add more information. b > > On 2 August 2012 18:33, Marc Carlson<mcarlson at="" fhcrc.org=""> wrote: >> Hi Stephen, >> >> It sounds like you might need to make an annotation package for your new >> platform. You can see a vignette that shows how to do that here: >> >> http://www.bioconductor.org/packages/2.10/bioc/vignettes/Annotation Dbi/inst/doc/SQLForge.pdf >> >> Please let me know if there are any other issues that crop up. >> >> >> Marc >> >> >> >> >> On 08/02/2012 09:20 AM, Stephen Rolfe wrote: >>> I have a set of files from the new Aragene-1_1-st microarrays. I am using >>> oligo to analyse these but have hit a problem with the annotation. >>> >>> I have the most up-to-date packages and don't hit any error messages. >>> However, using getNetAffx doesn't seem to add annotation data to my rma >>> normalised data set. >>> >>> The feature labels are all there and the probsetids have been set. All of >>> the other data are NA. >>> >>> >>> >>> Any insight would be much appreciated. Eventually I want to analyse the >>> data >>> in limma. >>> >>> (I tried building my own pd files using pdinfoBuilder as an alternative, >>> but >>> hit a bunch of error messages that I couldn't overcome.) >>> >>> Thanks for your help >>> >>> Steve Rolfe >>> >>> >>> >>> >>> >>> R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows" >>> >>> >>> >>>> library("pd.aragene.1.1.st") >>>> library(oligo) >>>> library(Biobase) >>>> celfiles<-list.celfiles() >>>> affyRaw<-read.celfiles(files=celfiles) >>> Platform design info loaded. >>> >>> Reading in : WT16HypCon1_01_A05.CEL >>> >>> Reading in : WT16HypCon2_02_A07.CEL >>> >>> Reading in : WT16HypCon3_03_B05.CEL >>> >>> Reading in : WT16HypInf1_04_B07.CEL >>> >>> Reading in : WT16HypInf2_05_C05.CEL >>> >>> Reading in : WT16HypInf3_06_C07.CEL >>> >>> Reading in : WT16RootCon1_07_D05.CEL >>> >>> Reading in : WT16RootCon2_08_D07.CEL >>> >>> Reading in : WT16RootCon3_09_E05.CEL >>> >>> Reading in : WT16RootInf1_10_E07.CEL >>> >>> Reading in : WT16RootInf2_11_F05.CEL >>> >>> Reading in : WT16RootInf3_12_F07.CEL >>> >>> Reading in : WT26HypCon1_13_H07.CEL >>> >>> Reading in : WT26HypCon2_14_G07.CEL >>> >>> Reading in : WT26HypCon3_15_H05.CEL >>> >>> Reading in : WT26HypInf1_16_G05.CEL >>> >>> Reading in : WT26HypInf2_17_A05.CEL >>> >>> Reading in : WT26HypInf3_18_A07.CEL >>> >>> Reading in : WT26RootCon1_19_B05.CEL >>> >>> Reading in : WT26RootCon2_20_B07.CEL >>> >>> Reading in : WT26RootCon3_21_C05.CEL >>> >>> Reading in : WT26RootInf1_22_C07.CEL >>> >>> Reading in : WT26RootInf2_23_D05.CEL >>> >>> Reading in : WT26RootInf3_24_D07.CEL >>> >>>> eset<-rma(affyRaw,target="core") >>> Background correcting >>> >>> Normalizing >>> >>> Calculating Expression >>> >>>> featureData(eset)<-getNetAffx(eset,"transcript") >>>> eset >>> ExpressionSet (storageMode: lockedEnvironment) >>> >>> assayData: 38408 features, 24 samples >>> >>> element names: exprs >>> >>> protocolData >>> >>> rowNames: WT16HypCon1_01_A05.CEL WT16HypCon2_02_A07.CEL ... >>> >>> WT26RootInf3_24_D07.CEL (24 total) >>> >>> varLabels: exprs dates >>> >>> varMetadata: labelDescription channel >>> >>> phenoData >>> >>> rowNames: WT16HypCon1_01_A05.CEL WT16HypCon2_02_A07.CEL ... >>> >>> WT26RootInf3_24_D07.CEL (24 total) >>> >>> varLabels: index >>> >>> varMetadata: labelDescription channel >>> >>> featureData >>> >>> featureNames: 13320001 13320003 ... 13545870 (38408 total) >>> >>> fvarLabels: transcriptclusterid probesetid ... category (18 total) >>> >>> fvarMetadata: labelDescription >>> >>> experimentData: use 'experimentData(object)' >>> >>> Annotation: pd.aragene.1.1.st >>> >>>> featureData(eset) >>> An object of class "AnnotatedDataFrame" >>> >>> rowNames: 13320001 13320003 ... 13545870 (38408 total) >>> >>> varLabels: transcriptclusterid probesetid ... category (18 total) >>> >>> varMetadata: labelDescription >>> >>>> varLabels(featureData(eset)) >>> [1] "transcriptclusterid" "probesetid" "seqname" >>> >>> [4] "strand" "start" "stop" >>> >>> [7] "totalprobes" "geneassignment" "mrnaassignment" >>> >>> [10] "swissprot" "unigene" "gobiologicalprocess" >>> >>> [13] "gocellularcomponent" "gomolecularfunction" "pathway" >>> >>> [16] "proteindomains" "crosshybtype" "category" >>> >>>> pData(featureData(eset))[1000:1002,] >>> transcriptclusterid probesetid seqname strand start stop >>> totalprobes >>> >>> 13321999 13321999 13321999<na> <na> NA NA >>> NA >>> >>> 13322001 13322001 13322001<na> <na> NA NA >>> NA >>> >>> 13322003 13322003 13322003<na> <na> NA NA >>> NA >>> >>> geneassignment >>> >>> 13321999 --- // --- // intron-exon control // --- // --- >>> >>> 13322001 --- // --- // intron-exon control // --- // --- >>> >>> 13322003 --- // --- // intron-exon control // --- // --- >>> >>> >>> mrnaassignment >>> >>> 13321999 --- // --- // intron-exon control // --- // --- // --- // --- // >>> --- // --- // >>> >>> 13322001 --- // --- // intron-exon control // --- // --- // --- // --- // >>> --- // --- // >>> >>> 13322003 --- // --- // intron-exon control // --- // --- // --- // --- // >>> --- // --- // >>> >>> swissprot unigene gobiologicalprocess gocellularcomponent >>> >>> 13321999 NA NA NA NA >>> >>> 13322001 NA NA NA NA >>> >>> 13322003 NA NA NA NA >>> >>> gomolecularfunction pathway proteindomains crosshybtype >>> >>> 13321999 NA NA NA NA >>> >>> 13322001 NA NA NA NA >>> >>> 13322003 NA NA NA NA >>> >>> category >>> >>> 13321999 normgene->intron >>> >>> 13322001 normgene->intron >>> >>> 13322003 normgene->intron >>> >>> >>> [[alternative HTML version deleted]] >>> >>> _______________________________________________ >>> Bioconductor mailing list >>> Bioconductor at r-project.org >>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>> Search the archives: >>> http://news.gmane.org/gmane.science.biology.informatics.conductor >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
ADD REPLYlink written 7.2 years ago by Stephen Rolfe20
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