Rgraphviz installation problems
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Jacob Hurst ▴ 20
@jacob-hurst-777
Last seen 7.1 years ago
this is the error message I get when installing Rgraphviz. my $LD_LIBRARY_PATH is (I think set correctly) /usr/local/lib/graphviz my graphviz version is 1.12 (although i previously installed 1.13 by mistake) my R version is 1.9.0 I would really appreciate some help! cheers jake :/usr/local/lib/R# R INSTALL Rgraphviz * Installing *source* package 'Rgraphviz' ... ** libs gcc -I/usr/lib/R/include `dotneato-config --cflags` -D__NO_MATH_INLINES -mieee-fp -Wall -fPIC -g -O2 -c RgraphvizInit.c -o RgraphvizInit.o In file included from /usr/local/include/graphviz/render.h:49, from common.h:20, from RgraphvizInit.c:1: /usr/local/include/graphviz/macros.h:28:1: warning: "NEW" redefined In file included from common.h:11, from RgraphvizInit.c:1: /usr/lib/R/include/Rdefines.h:129:1: warning: this is the location of the previous definition In file included from /usr/local/include/graphviz/types.h:11, from /usr/local/include/graphviz/render.h:51, from common.h:20, from RgraphvizInit.c:1: /usr/local/include/graphviz/pathplan.h:11: warning: ignoring #pragma prototyped In file included from /usr/local/include/graphviz/types.h:11, from /usr/local/include/graphviz/render.h:51, from common.h:20, from RgraphvizInit.c:1: /usr/local/include/graphviz/pathplan.h:16:22: pathgeom.h: No such file or directory /usr/local/include/graphviz/pathplan.h:24: error: parse error before '*' token /usr/local/include/graphviz/pathplan.h:28: error: parse error before '*' token /usr/local/include/graphviz/pathplan.h:33: error: parse error before '*' token In file included from /usr/local/include/graphviz/render.h:51, from common.h:20, from RgraphvizInit.c:1: /usr/local/include/graphviz/types.h:476: error: parse error before "Ppolyline_t" /usr/local/include/graphviz/types.h:476: warning: no semicolon at end of struct or union /usr/local/include/graphviz/types.h:488: error: parse error before '}' token /usr/local/include/graphviz/types.h:488: warning: type defaults to `int' in declaration of `Agedgeinfo_t' /usr/local/include/graphviz/types.h:488: warning: data definition has no type or storage class In file included from /usr/local/include/graphviz/render.h:52, from common.h:20, from RgraphvizInit.c:1: /usr/local/include/graphviz/graph.h:11: warning: ignoring #pragma prototyped In file included from /usr/local/include/graphviz/render.h:52, from common.h:20, from RgraphvizInit.c:1: /usr/local/include/graphviz/graph.h:23:17: cdt.h: No such file or directory /usr/local/include/graphviz/graph.h:57: error: parse error before "Dict_t" /usr/local/include/graphviz/graph.h:57: warning: no semicolon at end of struct or union /usr/local/include/graphviz/graph.h:62: error: parse error before '}' token /usr/local/include/graphviz/graph.h:82: error: parse error before "Agedgeinfo_t" /usr/local/include/graphviz/graph.h:82: warning: no semicolon at end of struct or union /usr/local/include/graphviz/graph.h:86: error: parse error before "Dict_t" /usr/local/include/graphviz/graph.h:86: warning: no semicolon at end of struct or union /usr/local/include/graphviz/graph.h:91: error: parse error before '}' token /usr/local/include/graphviz/graph.h:101: error: parse error before "Dict_t" /usr/local/include/graphviz/graph.h:101: warning: no semicolon at end of struct or union /usr/local/include/graphviz/graph.h:103: error: parse error before '}' token In file included from /usr/local/include/graphviz/render.h:53, from common.h:20, from RgraphvizInit.c:1: /usr/local/include/graphviz/globals.h:77: error: parse error before "FIG_CodeGen" /usr/local/include/graphviz/globals.h:77: warning: type defaults to `int' in declaration of `FIG_CodeGen' /usr/local/include/graphviz/globals.h:77: warning: type defaults to `int' in declaration of `GD_CodeGen' /usr/local/include/graphviz/globals.h:77: warning: type defaults to `int' in declaration of `memGD_CodeGen' /usr/local/include/graphviz/globals.h:77: warning: type defaults to `int' in declaration of `HPGL_CodeGen' /usr/local/include/graphviz/globals.h:78: warning: type defaults to `int' in declaration of `ISMAP_CodeGen' /usr/local/include/graphviz/globals.h:78: warning: type defaults to `int' in declaration of `IMAP_CodeGen' /usr/local/include/graphviz/globals.h:78: warning: type defaults to `int' in declaration of `CMAP_CodeGen' /usr/local/include/graphviz/globals.h:78: warning: type defaults to `int' in declaration of `CMAPX_CodeGen' /usr/local/include/graphviz/globals.h:78: warning: type defaults to `int' in declaration of `MIF_CodeGen' /usr/local/include/graphviz/globals.h:79: warning: type defaults to `int' in declaration of `XDot_CodeGen' /usr/local/include/graphviz/globals.h:79: warning: type defaults to `int' in declaration of `MP_CodeGen' /usr/local/include/graphviz/globals.h:79: warning: type defaults to `int' in declaration of `PIC_CodeGen' /usr/local/include/graphviz/globals.h:79: warning: type defaults to `int' in declaration of `PS_CodeGen' /usr/local/include/graphviz/globals.h:80: warning: type defaults to `int' in declaration of `DIA_CodeGen' /usr/local/include/graphviz/globals.h:80: warning: type defaults to `int' in declaration of `SVG_CodeGen' /usr/local/include/graphviz/globals.h:80: warning: type defaults to `int' in declaration of `VRML_CodeGen' /usr/local/include/graphviz/globals.h:80: warning: type defaults to `int' in declaration of `VTX_CodeGen' /usr/local/include/graphviz/globals.h:80: warning: data definition has no type or storage class In file included from /usr/local/include/graphviz/render.h:55, from common.h:20, from RgraphvizInit.c:1: /usr/local/include/graphviz/gvrender.h:12: warning: ignoring #pragma prototyped In file included from /usr/local/include/graphviz/gvrender.h:19, from /usr/local/include/graphviz/render.h:55, from common.h:20, from RgraphvizInit.c:1: /usr/local/include/graphviz/gvrenderint.h:12: warning: ignoring #pragma prototyped In file included from common.h:21, from RgraphvizInit.c:1: /usr/local/include/graphviz/graph.h:11: warning: ignoring #pragma prototyped In file included from common.h:24, from RgraphvizInit.c:1: /usr/local/include/graphviz/adjust.h:11: warning: ignoring #pragma prototyped make: *** [RgraphvizInit.o] Error 1 ERROR: compilation failed for package 'Rgraphviz' ** Removing '/usr/local/lib/R/site-library/Rgraphviz'
Rgraphviz Rgraphviz • 600 views
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Entering edit mode
Jeff Gentry ★ 3.9k
@jeff-gentry-12
Last seen 7.1 years ago
> this is the error message I get when installing Rgraphviz. > my $LD_LIBRARY_PATH is (I think set correctly) /usr/local/lib/graphviz > my graphviz version is 1.12 (although i previously installed 1.13 by mistake) How did you install 1.12? From the tarball, RPM, etc?
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